Daphnia carinata: 130685217
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Entry
130685217 CDS
T11669
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
dcar Daphnia carinata
Pathway
dcar03008
Ribosome biogenesis in eukaryotes
dcar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcar00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
130685217
09123 Folding, sorting and degradation
03018 RNA degradation
130685217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcar03021
]
130685217
03019 Messenger RNA biogenesis [BR:
dcar03019
]
130685217
03009 Ribosome biogenesis [BR:
dcar03009
]
130685217
03016 Transfer RNA biogenesis [BR:
dcar03016
]
130685217
Transcription machinery [BR:
dcar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130685217
Messenger RNA biogenesis [BR:
dcar03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
130685217
Ribosome biogenesis [BR:
dcar03009
]
Eukaryotic type
Pre-60S particles
RNases
130685217
Transfer RNA biogenesis [BR:
dcar03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
130685217
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
130685217
NCBI-ProteinID:
XP_057364451
LinkDB
All DBs
Position
3:complement(10054049..10066364)
Genome browser
AA seq
1017 aa
AA seq
DB search
MGVPAFFRWLTQKYPSVICDCIEDKVRTTQDGTRLPIDSSKPNPNGVEFDNLYLDMNGII
HPCTHPEDRPAPKNEDEMMVAIFDCIDRMFSIVRPRKLLYMAIDGVAPRAKMNQQRSRRF
RASKEIAEKVLTIANVRESLQARGAYVPSEKDKGEHFDSNCITPGTPFMHRLSACLHYYV
HDRLRNDPGWKNIGVILSDANVPGEGEHKIMDYIRRQRAQPSHDPNTRHVLCGADADLIM
LGLATHEASFTIIREEFKPNKPRPCEICNQLGHDLTDCQGAEREKSGEHDEIGPNIAAEQ
NYIFVRLYVLREYLERELSMPNLPFEYDLERAIDDWVFMCFFVGNDFLPHLPSLEIREGA
IDRLVNLYKDCVYKTKGWVTDSGFVNLERVQIILAQLGRAEDEIFKKRQQDELSFRQRMR
NKNRRFGGGGGSRPAFLPQGQFAPRPVGREFNNPSITNAHQEIQQGRRNQVQNTQAAIEL
RAMLRSSTEEVEVVEKVEIVQKTGASNFANGQGGGVKRKREDDDEDDFSHDEVRLWEDGF
KERYYESKFAVSPTDEEFRSKVALEYVRGLCWVLQYYYQGVPSWKWYFPYHYAPFASDFQ
DILSVKTVFKKGTKPFRPLEQLMGVFPAASRSHVPRPWAELMVDPESPIIDFYPEDFKID
LNGKKFAWQGVALLPFVDEKRLKKAVKSLFDELTEDEKRRNCLGENQFFVGKHHKGYDFL
RGLASETSSGEELQMYQMEPSYFGGISGTVLVSDKCVGAGEALESPVRGLEPIYDCHVVC
LDYRDPMPDDSDYKYLACRLAGAKAPAPSLKPQDFDESSNGPWRPQVGMSRSTQRGSLHT
AGHRMLGHHSRPRPYTPSPFPPRGPRPMGGPMASAAAYFDSPDQHQMSRGDHRGGRGRGG
HDDWNRSNDQGRSGWGAGGGGASYPPPNDYHRQQQHHGRGGYGYDQPNRFPSVSVARFSG
PPATSNIRGGGISNHYAPRPRGGFQQGPPQRPPGPRGNAPSSAGYGYYTSGYQGKRF
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagctttttttagatggctgactcagaaatatccttctgttatttgcgat
tgcatcgaagacaaggtaagaacaacgcaagatggaacacgattaccaattgattcttca
aagccaaacccgaatggtgtggaatttgataatctctaccttgacatgaatggcattatc
catccttgcacccatcctgaagacagaccagctccaaaaaatgaggatgagatgatggtt
gccatttttgattgcatcgacagaatgttctccattgttcggccaagaaagttgctatac
atggccattgacggagttgcaccccgagctaagatgaaccaacagcgttcccgccgattc
agggcatccaaagaaattgcagagaaagttctaactatagccaacgttcgcgaaagtctt
caggcaagaggtgcatacgttccttcagaaaaagacaaaggggagcattttgacagcaat
tgtattacaccgggcacaccgttcatgcatcgactgtcagcgtgcctccactattacgtt
cacgataggctacgcaatgacccaggatggaaaaatattggggtcattctctcagacgca
aacgtacctggggaaggggagcacaaaatcatggactatatcagaagacagagagcacaa
cccagccatgatccaaatacgaggcatgtgttatgtggggccgatgccgaccttatcatg
ttgggtctagcgacacatgaagctagtttcacaatcattcgggaagaattcaagccaaac
aaacctagaccttgtgaaatctgtaaccaattaggacacgacctgactgattgccaaggg
gctgagcgcgaaaaatctggagaacacgatgaaataggtccaaacatagcggccgaacag
aattacatttttgttcggctctacgtccttcgcgaatatctggaaagggagctgagcatg
cctaacttgccgtttgagtacgacctagagcgagccattgacgattgggtctttatgtgt
ttcttcgtcggcaatgactttttacctcatctcccatcattagagatccgcgaaggggct
attgatcggctggttaacctgtacaaggattgcgtgtacaagaccaagggatgggtaacg
gatagtggttttgtaaatttggagcgggttcaaattatcctcgcacaacttggccgcgct
gaagatgaaatattcaaaaagcggcaacaggatgaactttcatttagacagcgtatgaga
aacaaaaacaggagatttggtgggggtgggggaagtcgtccagcatttttacctcagggc
cagtttgctccccgtccggttggcagagaattcaacaaccccagcatcaccaacgcacac
caagaaattcaacaaggtcgccgaaatcaagtgcaaaacacacaagctgccatcgagctg
agagcaatgttgcgttcatcgacggaagaagtcgaagtcgtagaaaaggtggaaattgtc
caaaaaacaggtgcctctaattttgctaacggccaaggaggtggagtcaaacgcaaaagg
gaggatgacgacgaagacgattttagccatgacgaagtacgtctatgggaagatggtttc
aaagagcgatactacgagagcaagtttgctgtgtcgccgactgatgaagaattccgttca
aaagtggctctggagtacgtaagaggcctctgctgggtactccagtactactatcaaggt
gtaccatcgtggaagtggtactttccgtaccattatgcaccatttgcatctgactttcag
gacatattgtcagtgaaaacagttttcaaaaaaggaacaaaaccttttcgtccactagaa
caactgatgggtgtcttccctgctgctagtcgttcgcatgttcctcggccttgggcagaa
ctgatggtggaccccgaatcgccaatcatcgatttttatccggaagacttcaaaatcgat
ttaaatggaaagaagtttgcctggcaaggtgtagctcttcttccgttcgttgatgaaaaa
cggcttaagaaagctgtgaaatctctttttgatgagttgacggaagacgaaaagcggagg
aattgccttggggagaaccaattcttcgtaggaaaacatcacaaaggctacgattttttg
cgaggtcttgctagcgagacttcttccggagaagagttgcaaatgtatcagatggagccg
tcgtatttcggtggcatttcgggcacagttcttgtttccgataaatgtgttggtgctgga
gaagctcttgaatctccagtacgaggattggagcccatttatgattgccatgttgtttgc
ttagattaccgcgatcctatgccagacgatagtgactacaaataccttgcgtgtcgccta
gctggtgccaaagctcctgctccatcgctgaaaccgcaagattttgatgaatcaagtaat
ggaccttggagaccgcaagttggtatgtcacgctcaactcaaagaggaagtctccatacg
gctggccatcgaatgttaggacatcacagtcgaccaagaccctatactccttcaccattt
ccaccaagaggacctcgtccaatgggaggacctatggcttcagcggcagcgtattttgat
tctccggatcaacaccagatgtcacgcggagaccatcgtggagggcgaggtcgaggtgga
cacgatgattggaatcgatcaaacgatcaaggtcgatcgggttggggtgccggtggagga
ggcgcaagctatcctcctccaaacgactaccatagacaacagcagcatcacggacgcggc
ggatacggctacgatcaaccaaacagatttccttccgtttccgtcgctagattcagtggt
ccacctgcaacgagtaacatccgcggcggaggcatcagtaatcattacgctcctcgtccg
cgcggcggctttcagcagggacctccacagcgacctcctggtcctcgggggaacgctccg
tcatcagctggatacggttactacacttccggttatcaggggaaaagattttaa
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integrated database retrieval system
