Daphnia carinata: 130686401
Help
Entry
130686401 CDS
T11669
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
dcar
Daphnia carinata
Pathway
dcar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130686401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcar03041
]
130686401
Enzymes [BR:
dcar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130686401
Spliceosome [BR:
dcar03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
130686401
Complex B
130686401
Complex C
U2 SnRNP specific factors
130686401
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Pollen_allerg_2
MscL
Motif
Other DBs
NCBI-GeneID:
130686401
NCBI-ProteinID:
XP_057365499
LinkDB
All DBs
Position
2:complement(4696115..4699454)
Genome browser
AA seq
802 aa
AA seq
DB search
MNSGRGGSRFSGFSVGPRPRANLNKADGSLHAVPPPPSMTRLGNPNTIPLATRFSRPGVP
SSSSAGYNRFHPQPGAGRIDVELVPPVSISKQGYSTLNAISQGAINTTYGVPTNRPKTED
DYFDEDDDEPPSNEPLYQPGPDSPTFTKNAESDDEEDPLDAFMNDLNQKVKKEAIKVPEK
EDLSGKNKAKGVRHDIEEEDDEESYYRYIKENPLAGLQGDDSDSEQIEYDEDGNPIKLGK
KHIDPLPPIDHSTITYAPFEKNFYEEHDEIKNLPLNQSNELRETLGLKVSGISIPKPVCS
FAHFNFDEKLLNVIRKSEFTNPTPIQSQAIPAALSGRDVIGIAQTGSGKTAAFLWPMIVH
ILDQPVLKQGDGPIGVILAPTRELSQQIYTEAKKFCKVFGISVVCCYGGGSKWEQSKDLE
QGAEIVVATPGRMIDLVKIKATNLQRVTFLVLDEADRMFDMGFEPQVRSICNHVRPERQT
LLFSATFKKRIEKLARDVLSDPIRIVQGDVGEANQDVTQVIEVIAPTAKYSWLIVRLVEF
MASGSVLIFVTKKANAEELCASLKSREMSVALLHGDMDQIDRNQVISSFKKKEMDILVAT
DVAARGLDIPHIRTVINYDIARDIDTHTHRIGRTGRAGEKGTAFTLVTPADKEFAGHLVR
NLEGANQQVPEPLMDLAMQSAWFRKSRFKGGQGRKPNVGGRGLGYSDKTPTTANRTLTGA
NAIKPVFQSGPSSFSKPTQGPAAAAGPSGGRLAAMKAAFQSQYKQQFCSSSDNKPPQPLA
SDSNSAEGSGQRPVKKKSRWDD
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgaattcaggaaggggtggcagtcgattttcgggttttagtgttggcccaagacctagg
gcgaatctgaacaaagctgatggcagccttcacgcagttcccccgccaccgtcgatgacg
agacttggtaatccgaataccatacctcttgccacaagattttcgcggcctggcgttcca
agtagcagctcagctggttataacagatttcatcctcaacctggagctgggcgcattgat
gttgagcttgtaccgcctgtgtcaattagtaaacaaggttatagcaccctaaatgcaatt
agccagggtgcaattaacacaacatatggcgtacctactaataggcccaaaactgaagac
gattactttgatgaagatgatgatgaacccccctcaaatgaacccttatatcaaccagga
ccggattcaccaacttttacaaaaaatgctgagtctgatgatgaagaggacccattggat
gcttttatgaatgatctcaatcaaaaagttaaaaaagaagcaataaaagttccagagaaa
gaagatttaagtgggaaaaataaagccaagggtgtgcgccatgatattgaagaagaggat
gatgaagaatcatattatcggtacattaaagaaaatcctcttgctggattacaaggagat
gactctgattcagaacaaattgaatatgatgaggatggaaatccaatcaaactaggaaaa
aagcacattgaccctcttcctcccattgatcactctaccattacatatgctccatttgag
aaaaatttctacgaagagcatgatgaaataaaaaacctaccacttaaccagtctaatgaa
ctgagagaaacattgggcctaaaagtgtctggaatctcaatcccgaaaccagtatgcagt
ttcgcccactttaatttcgacgaaaaattgcttaacgtgattcgtaagtccgagttcaca
aatcctactcctatccagtctcaagcaattccggctgcactctcgggccgtgacgttatt
ggtatagctcagaccggtagcggtaaaacagcagcattcctctggccaatgattgttcat
atactggatcagcccgttctgaaacaaggcgatggacctatcggtgttatattggcacct
actcgcgaactcagtcagcaaatctacaccgaagcaaaaaagttttgtaaagtttttggc
atcagcgtagtttgctgttatggtggtggttccaaatgggagcaatcgaaagatttggaa
caaggtgccgaaattgtagttgccactcctggtcgaatgattgatctggttaagataaaa
gccacgaacttacagcgggttacctttttggtcttggacgaagcggaccggatgtttgat
atggggtttgagccccaagtgcgatctatttgcaatcacgtccgtccggaacgacaaacc
cttctttttagcgcaacattcaaaaaacgaatagaaaaacttgcccgtgatgtgctgtct
gatccaattcgaatcgttcagggtgatgtgggggaggcaaatcaagacgttacgcaagta
attgaagttatagctcctactgctaagtacagttggctcattgtacgcctagtagagttt
atggcttcgggatccgtgctaattttcgtaacaaaaaaggcgaatgctgaagaactgtgt
gccagtttaaaatccagagaaatgtctgtagctcttttgcatggtgacatggatcagatt
gatcgtaatcaagtaattagctccttcaaaaagaaggaaatggacattctcgtggccacg
gatgtcgccgctcgtggtcttgacattccccacatccgaacagtcatcaactacgacatt
gctcgtgatattgatacgcatacgcacagaattggaagaacgggtcgtgccggtgaaaaa
ggcacggcttttacgctagtaactcctgctgacaaggaatttgccgggcatttagtcaga
aatttggaaggagctaatcaacaggtgccagagccattaatggatcttgccatgcagagt
gcgtggttccgaaagtcgcgtttcaaaggtggtcaagggcggaaacctaatgtcggtgga
cgaggcttaggctactcggataaaacccctactactgccaacagaacactcactggtgcc
aatgcaattaaacctgttttccaaagtggaccgagttctttttctaaacctacccaagga
ccagctgccgcagcaggacccagtggaggtcgtttggctgcaatgaaagccgcttttcaa
tctcaatataaacaacagttctgcagcagctccgacaataaaccaccgcaacctttggct
tccgattcaaattcagccgaaggtagtggacaacggcccgtgaagaaaaagagcagatgg
gacgattga
DBGET
integrated database retrieval system
