Daphnia carinata: 130691527
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Entry
130691527 CDS
T11669
Name
(RefSeq) exosome RNA helicase MTR4-like
Organism
dcar Daphnia carinata
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
130691527
NCBI-ProteinID:
XP_057370469
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All DBs
Position
1:complement(12530142..12534115)
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AA seq
1033 aa
AA seq
DB search
MDNIDDLFSVFSEESTVTRSFVGTSKNVSKPESSEQIEGPVASLKRHKTTTDGDGSPQAK
TSKMETVEDENIVDDKILMSGPRIAIHTLETIEQCTHEVAVPPDTDYAPLRPYSGPPAKE
YPFVLDPFQKEAILCLQNSQSVLVSAHTSAGKTVVAEYAIAMSLKEKQRVIYTTPIKALS
NQKYREFSEEFKDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEVVREVAWVVFDEIH
YMRDKERGVVWEETIILLPDNVHFVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRPVP
LQHYIFPGGEGIHLVVDEKGQFREDNFNEAMAVLHNVGDAASGDKRGRRGGVKGGEANSS
CFKIIKMIMEKNFSPVIVFSFSKKECEFYALQMAKLDFNSNEEKKLVGEVFQNAMEVLSE
EDRKLPQVEQVLPLLKRGIGIHHGGLLPILKETVEILFSEGLIKALFATETFAMGLNMPA
RTVFFTNARKFDGKENRWISSGEYIQMSGRAGRRGLDEKGIVILMIDEKMSPAVGRNLVK
GQADLLNSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQQYAAIPHLVENVKQKEKDLK
KFSVPQEENVSSYYTIRQQLANLNDGLHKYIVKPQYIVPFLQAGRMVHIKNKGDDFGWGI
IVDYKKENLVGKSDDSTTKDLDASYVVSVLMYISKASTESKVVSALKPCGPKEDGEMRVV
PCFLNLITKISSVRLYFNEDLRPLDNRMEVYKRIQEVHRRFPNGVPLLDPVKDMHIKDKD
FIEMMQRSRAFEERLTAHQLHRDTKVESLCQLYHDKQGLVAQLKHAKDELKKAKSLLQMT
ELKCRKRVLRRLGYCTAADVIELKGRVACELSSADELLLTEMIFNGLFNALDVTQTAALL
SCFVCDEKSNEMPKLSEALSGPLKQMQDLARRIAKVSVEAKLELEEDEYVEKFKPYMMDL
VAAWCRGASFGEICKMTDLFEGSIIRCMRRLEELLRQMVQASKSIGNTELENKFSEGIKL
IKRDIIFAASLYL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggacaatattgacgacctcttcagcgtttttagcgaggaatctaccgtgacaagatcg
ttcgttggaaccagcaaaaatgttagcaagccagaatcaagtgaacaaattgaaggacct
gttgccagtctcaaacgtcacaaaacaacgacagacggtgatggatctcctcaagcaaaa
acttccaaaatggagactgttgaagatgaaaatatagttgatgacaaaattcttatgtcg
ggaccaaggatagcaattcacacacttgagacaatagagcagtgtactcatgaagttgct
gtacctccagatactgattacgctccattgcgaccatattctggccctcctgctaaggag
tacccttttgttttagatccttttcaaaaagaagcaattctctgtttgcagaattcacaa
tcagtactggtatcagcccacacttcagctggtaaaacagttgttgcagaatatgcaatt
gccatgtccctgaaagagaagcagcgtgtcatttacacaactcccatcaaagctttgagt
aaccaaaagtaccgagaattttcagaagaatttaaagatgtaggactgatgacaggagat
gtcaccatcaaccccacagcttcttgcttgatcatgacaactgagattcttaggagtatg
ctctatcgtggctcagaagttgtgcgtgaagtggcctgggttgttttcgacgaaattcac
tacatgagagacaaggagcgtggtgtagtctgggaagaaactattatcttgttaccagac
aatgtccattttgtctttctttcagccaccattcctaatgcgcgtcagtttgcagaatgg
atttgccatttgcacaaacaaccatgtcacgtcgtgtacaccgactatcgtcctgttccc
cttcaacactacattttccccgggggcgaaggcattcacctcgttgtcgacgaaaagggt
cagtttcgagaggataactttaatgaagcgatggcggtattgcataacgtcggagatgca
gcatcaggcgacaagcgaggtcgacgtgggggagtcaagggcggcgaagccaactcgagt
tgctttaaaatcatcaagatgatcatggaaaagaacttttctcctgtgattgtcttcagc
tttagcaaaaaggaatgtgaattttacgcgctgcaaatggccaagttggattttaattcg
aacgaagagaaaaaattagtgggcgaagtcttccaaaatgctatggaagttttgtctgag
gaagatcgtaaactgccccaggtggagcaagtcctacctctgttgaaacgtggcatcggc
attcaccacggagggttgctaccaattttgaaagagaccgtagaaatcttattctctgag
ggacttatcaaggctcttttcgctacggaaacgtttgccatgggcctcaacatgcctgct
cgtacggtgtttttcacaaatgctcgcaagtttgacggcaaagagaatcgatggatttct
tccggagaatacattcagatgtcaggtcgtgctggtcgtcgtggtctcgatgagaaaggt
attgtcattttgatgatcgacgaaaagatgagcccagctgttggtcgcaatttggttaaa
ggccaagcagaccttctcaactcggcgttccaccttacctataatatggttcttaacttg
ctacgcgtcgaggaaattaacccagagtacatgctggaacgttcctttttccagtttcag
cagtatgctgccatcccacatttagtcgaaaatgtgaaacagaaagaaaaagatctgaag
aaattctcagttccgcaagaagagaatgtttcttcctattacactattcgacagcaactt
gccaacctgaatgatggtcttcataagtacatagtgaaacctcagtacatagttccgttt
ctgcaagctggacgcatggttcacataaaaaacaagggagatgattttggttggggtatc
atagttgattacaaaaaagaaaatttagtgggaaagagcgatgacagtacaacgaaagac
cttgatgcatcatacgttgtcagtgtcctgatgtacatctccaaagccagtaccgaaagt
aaagtagtgtcagcattgaagccttgtggacccaaagaagacggagagatgcgcgtagtc
ccctgtttccttaacttgatcactaagattagctcagtccgcctttactttaacgaagac
cttcgtccgctcgacaaccgtatggaagtgtacaaaaggatacaggaagttcacagacgc
ttcccaaacggcgttccactactggatccggtcaaggacatgcatatcaaagacaaggat
ttcatagaaatgatgcaacgatcgagagctttcgaagagcgtttgacagcccaccaactc
catcgtgatactaaagtcgagtccctttgccagctttaccacgataaacaagggttggtg
gctcagttaaaacacgcaaaagacgaactgaagaaagccaagtcgcttttgcaaatgacg
gagctgaaatgccgtaagcgcgttttgcgtcgcctaggctactgcacggcagcggatgtg
attgaactgaaaggtcgagtggcttgcgagctctcaagtgcagacgagctcttgcttact
gaaatgatcttcaacggcctcttcaatgcacttgatgtgactcagacggctgctttgctc
agttgctttgtctgcgatgaaaaatcaaacgaaatgcctaaactgtcagaagcgttgtcc
ggcccactgaagcaaatgcaagatctggcccgaagaatcgctaaagtatcggtggaagct
aagttggagctcgaggaagacgagtatgttgaaaaattcaaaccttatatgatggatctc
gtggcggcgtggtgtcgcggagcttcgtttggtgaaatctgtaaaatgacagatcttttt
gaaggaagcattattcggtgcatgaggcggttagaagaattgctcagacagatggtccag
gcatccaagagtataggaaataccgagttggagaacaagttcagcgaaggaattaagctt
ataaaacgtgatatcatctttgctgccagcctgtatctgtaa
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