Daphnia carinata: 130692072
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Entry
130692072 CDS
T11669
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dcar Daphnia carinata
Pathway
dcar03013
Nucleocytoplasmic transport
dcar03015
mRNA surveillance pathway
dcar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130692072
09122 Translation
03013 Nucleocytoplasmic transport
130692072
03015 mRNA surveillance pathway
130692072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis
130692072
03041 Spliceosome
130692072
Enzymes [BR:
dcar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130692072
Messenger RNA biogenesis [BR:
dcar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130692072
Spliceosome [BR:
dcar03041
]
Complex C
Other components
EJC/TREX
130692072
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130692072
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
130692072
NCBI-ProteinID:
XP_057371132
LinkDB
All DBs
Position
1:complement(152023..197893)
Genome browser
AA seq
425 aa
AA seq
DB search
MADNEDLLDYEDEETTEQVAVEGAGDAPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDVLCQAKSGMGKTAVFVLATLQQLEMVDNQVSVLVLCHT
RELAFQISKEYERFSKYMTTIKVGVFFGGLNIAKDEQTLKSNCPHIVVGTPGRILALVRS
KKLNLRTLKHFVLDECDKMLEALDMRRDVQEIFRNTPHEKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDESKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVVIFVKSIQRCMA
LCQLLGEQNFPAIAIHRSMTQEERLSRYQQFKDFKKRILVATDLFGRGMDIERVNIVFNY
DMPENSDSYLHRVARAGRFGTKGLGITFVSDENDAKVLNDVQERFDVSITPLPDEIDLSS
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaacgaagatcttttggactacgaagatgaggaaacgactgaacaagtagcc
gttgaaggagctggggatgcgccagccaaaaaagaagtcaaaggcacatacgtctcgatc
cacagctctggtttccgagatttcttgctcaagcctgaaatcttgagagccattgttgac
tgtggttttgaacatccttctgaagttcagcatgagtgcatccctcaggctgttttgggt
atggatgttttgtgccaagccaaatctggtatgggaaagactgcagtttttgtgttggcc
accctgcaacagctagaaatggttgacaaccaggtctctgttcttgttctgtgccatact
cgagaacttgctttccaaatttccaaggagtatgaacgtttctcaaagtacatgacaacc
atcaaggttggcgtattctttggtgggttgaatattgccaaggatgagcaaactctgaag
tcaaattgcccccacatcgtggttggaacccctggtcgtatcttggcgttggtccggtcg
aagaagttgaacctccgcacactaaagcacttcgttcttgacgagtgtgacaaaatgctt
gaagctttagacatgcgtcgagatgtgcaggagattttccgcaacacacctcatgaaaaa
caagtgatgatgttcagcgccacgctgagcaaggagattcgccccgtctgcaaaaagttt
atgcaagatccgatggaagtatacgtcgatgacgagtccaaactcactcttcatggtctc
cagcagcactatgtcaaactcaaggacaacgaaaagaaccggaaactgttcgagctcctt
gatgtacttgaattcaatcaggtcgttatcttcgttaaatccatccagcgttgcatggct
ctttgtcagttgctaggcgaacaaaactttcctgctattgcaattcatcgtagcatgacg
caagaagagcgtttatctcgttaccaacagttcaaagatttcaaaaagcgtatccttgtg
gcgacggatttatttggtcgaggcatggacatcgaacgtgtcaatattgtctttaactac
gatatgcctgaaaattcagactcgtacctgcatcgtgtcgctcgcgctggtcgttttggg
accaagggtttgggtatcacatttgttagcgatgaaaacgacgccaaggttttgaatgac
gtacaagaacgctttgacgttagcatcacgccgttgccagatgaaatcgatttatcgtcc
tacattgagggacgctaa
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