Daphnia carinata: 130692726
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Entry
130692726 CDS
T11669
Name
(RefSeq) tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
dcar Daphnia carinata
Pathway
dcar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130692726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcar03019
]
130692726
Messenger RNA biogenesis [BR:
dcar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
130692726
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_14
TPR_1
TPR_17
TPR_19
TPR_2
TPR_CcmH_CycH
TPR_8
TPR_11
TPR_16
TPR_12
TPR_9
CFAP70_TPR_C
CABIN1_N
ANAPC3
CFAP70_mid_TPR
RMD1-3
ARM_TT21_C
TPR_7
TPR_Psidin_N
TPR_COPA_B
T7SS_EccA1_N
ChAPs
Fis1_TPR_C
ARM_TT21_N
TPR_NPHP3
HIR3_bundle
Motif
Other DBs
NCBI-GeneID:
130692726
NCBI-ProteinID:
XP_057371818
LinkDB
All DBs
Position
7:complement(10163555..10168185)
Genome browser
AA seq
1354 aa
AA seq
DB search
MEYDVKKALKDAKEFVKNKNYSSALDTCKGILKHEKNNYLSWVLSAVSFQELGQSEKALT
AFVKATELQPDQLTAWQGLAAFLEQERNQLVVTTDGGQQSQELAQKLCDVYKKLECLLKS
DPVKHLNILKKQCELYTTLGQLENSADRATLLLNKGDKEITKSVAKTLSPVLSLLDHPTL
QILGSSLDELVDPEGEKLDKFFIEQKLLVALQLKQYSKAVTVASEILISNPKHVPSLEVI
AHAFVEEEKIDVSLDRVGQIIDALLSGNPKSEYGLLAKARWLLLNAKPLEAKQLLEFMNT
KDATRKSRILCEAYQELHQWAKMENICRDGLESTVSAESDQRFWKLMLIKSLMEAGGDER
LKEASMFLDNIRDEAKNLILFRLLDTTFHLRSNQLEKCKHNLDILEEEQPVDNMDKVLLI
KAEYLEKIGRDVDVTQLIDHVCESYPQNVEVLLKAAKMLWHSSSNRGKSVAIMLNVIKLN
RDIAEPYVFVGTFYGEQQHNPSSLQRAVRCLEKAFQLDPYEIRTCQKLLELYRLLDDIPS
AVKLLEVVVRCNAKNRRWAWLQKGLLHLKMFQKQKHVPEKEKEAGLAITCLQNAMAIDSN
DSSGWEALGEAYIARGSYTAALKAFQRASELNPQSTYSSYQIASIKQIMGENAEAVDAFE
ALLKRTPDYVPALKGLAETVLNQAIDYLTDGFTGRTVDCCSKAFDLLVKASRLNSHLACV
WALLGQVCLLLRNIPDADFMLLNVPQVLHPDKDLPITKNLVMEMGPKFFLSALRLLPDSG
ALWHNLALSYQSCWKLNETAAHKSSALAAIKKAITLEPKDSSHWDLLGLIATEPAVRQHA
FIRALELSPNAPRTAATWTHLGALYMENGDLHLAHECFKQSQNIDPFHVPAWIGQGNIAE
QLSPEEAMDLFRHTATIGSGTPGQCEGSPSYAQWVINTLADPLAKQTAHYRYSIVQMHAV
PTAIDSLVKYVALYPNDSCALNLLGLLYERQGLLSKAEEAFLNGIEHLSLDDSTVSRTRM
DKMKANLARLYTSLDRCDEATELYGTLQESELSSACGIALAHFKANRHAEAYVTYEAALN
WLASDDEKRSHLLVAMAMAAFRRDFPDAEAANLLLYESSQLQPPSVYGLLALGALGLLTE
DDTLTTAAFQELLPYQTESRYVADISRLSSYQQSLFGNELQGQREIARNIHMLPNVPELW
TLLASFKASVVVQASHSRPSDGLQVARWAEIAFSARCQSDSAADHVFQTIDMSQVISLIS
LGYLLAGEGTTSLTTAQKAVHCNPHSAASWSVLLAAALPFWSGTGIGNDRIQRLGWLKKL
IEHLRRKCDVTVYSRLTPWLGHYERRLVSFLSQS
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atggaatacgacgtgaaaaaagctttaaaagacgcaaaagagtttgttaaaaacaagaac
tacagttcagccttggacacctgtaagggtatattgaaacatgaaaagaacaactacttg
tcatgggttttgagtgcagtctcttttcaagaacttggccaaagtgaaaaagccttgaca
gcttttgttaaagcaactgagctacaaccagatcaactgactgcctggcaagggctagca
gcatttttggaacaagaaagaaatcaattggtggtcactactgatggtggtcaacagtca
caagagcttgcacagaagctatgtgatgtgtacaaaaagctagaatgccttcttaaaagt
gatcctgtgaaacatttaaatatcttgaagaagcaatgtgaactgtacacaacattagga
cagcttgagaattctgctgacagagcaacccttcttctgaataaaggagacaaagaaata
accaaatctgtagcaaagacactgtcccctgttttatctcttttggatcatccaacacta
caaattcttggaagttcacttgatgaactagttgacccagaaggcgaaaaattagacaaa
tttttcattgagcaaaagcttttggttgcgttgcaattgaagcagtattcgaaggcggta
accgtggcttctgaaattcttatttcaaacccaaaacatgttccatccctggaagtcatt
gcccatgcatttgttgaagaagaaaaaattgatgtttcgcttgatcgagttggacaaata
attgatgcattgctgtcggggaatccaaaaagcgaatatggtttactagcaaaagcacgg
tggttgctcttgaatgcaaaaccgttggaagccaaacaattattagaatttatgaacacc
aaggacgcgacgcgtaaatcacgtattctttgtgaagcgtaccaagaattacatcagtgg
gcaaaaatggaaaacatttgccgcgacggcttggagtctactgtttcggcagaatcggat
cagcgtttttggaaattgatgctgataaaaagcttaatggaagccggtggagatgaacgt
cttaaagaagcgtcgatgttcttggataatattcgggatgaagcaaagaacttaattttg
tttcgattattagatactacatttcatttgcgttccaaccaattggaaaaatgcaaacat
aatcttgacatactagaagaggaacaaccagtcgacaatatggataaggtacttcttatc
aaagccgaatatttggaaaaaatcggacgcgacgtggacgttacgcagctaatagatcat
gtttgtgaaagctatccacaaaacgtcgaagtattattgaaggcggcaaaaatgttatgg
cacagttccagtaaccgcgggaagagcgtcgccattatgcttaacgtcattaagctgaat
cgagatattgcagaaccatacgtgtttgtggggacgttttatggcgaacaacagcacaat
ccttcaagcttgcaacgagctgtgcgatgccttgagaaggccttccaattagatccctat
gaaataagaacgtgtcaaaagttgctggaactctatcggttgcttgatgatattccaagt
gccgttaaacttttggaggttgtcgtccgatgtaatgcaaaaaatcgtcgatgggcttgg
ttgcagaaaggtcttctgcacttaaaaatgttccagaaacagaaacatgttccggaaaag
gaaaaagaagctggcttggctattacatgcttgcaaaacgcgatggctatcgactccaat
gatagttcaggctgggaagccttgggcgaagcctatattgctcgtggatcgtatactgct
gctttgaaagcattccagcgggcgtccgaattgaaccctcaatcgacttactcgtcatat
caaatcgcctccatcaaacaaataatgggtgaaaacgcagaggctgtagacgcatttgaa
gctctcctcaagcgcactccagactatgtgcctgcccttaaaggacttgctgaaaccgtt
ctaaatcaggcaattgattacctaacggacggtttcactggcagaactgtggactgctgt
tcgaaagcttttgatttgctcgtgaaagcaagtagactcaatagccacttagcctgtgta
tgggctctattaggtcaagtctgtttgctgcttcggaatattccggatgcagatttcatg
ttgctgaacgtaccgcaagtgcttcatccagacaaagatcttcccattaccaaaaatctg
gtgatggagatgggtccgaaattcttcttgtctgcattgaggttgctgcctgattcaggt
gcgttgtggcacaatttggctttatcttatcaatcctgttggaaactcaatgaaactgca
gcccacaagtcttctgcattggcggctatcaagaaagccattactttggagcctaaagat
tcttcacactgggatttgctgggtctgattgctactgaaccagccgtccggcagcacgcc
tttattcgtgccttggagcttagtcctaacgcaccaagaactgctgccacctggactcac
ttaggagcactgtatatggaaaacggcgacctgcatcttgcccatgaatgcttcaaacaa
tcgcaaaacatcgacccattccatgtcccggcttggattggccagggaaatattgccgaa
caattgagtccggaggaagcgatggacctattccgacacacagcaaccattggtagcggt
actcccggccagtgtgaaggaagtccatcctacgctcaatgggtgatcaacactttggct
gatcctctagccaaacagacggcccattatcgctatagcattgtccagatgcacgctgtg
ccaactgcgattgacagtctagtcaagtatgtcgcactctaccctaacgacagttgcgca
ctcaatttactaggactcctctacgaacgccaaggattactttcgaaagccgaagaagcc
ttcttaaacggtattgaacatctaagtttggatgatagcacggtcagcagaacccgcatg
gacaagatgaaagctaatttggccagactttacacttctcttgatcgatgtgatgaagcc
actgaactgtacggcacattgcaggaatccgagctaagctcagcgtgtggaattgctctt
gctcacttcaaagccaacagacatgccgaggcttatgttacctatgaagcagccttgaat
tggctggcttcagatgacgagaaacgttctcatttattggtagctatggcaatggcagcg
tttcgacgcgatttccccgacgccgaagcagcaaatttgcttctttacgaaagctcacaa
ttgcaaccaccctccgtctatggattgttagctcttggagcactcggtctgctaacagaa
gacgataccttgactacagccgctttccaggaattgttaccgtatcagacagagtcacgc
tatgtagcagacatcagccggttgtcatcgtatcagcaatcgctttttggaaacgaacta
caagggcaacgtgaaattgcgcgcaatattcatatgctgcccaacgttcctgagctatgg
acattattggcttcttttaaagcttcagttgtagtccaggcgtctcattctcggccgtct
gatggattgcaggtggctcgttgggctgagattgcatttagtgctcggtgccagagtgac
tcggctgcagaccatgtttttcaaaccatcgatatgtcgcaagttatttcgctcatcagt
ctgggctatctactagccggagagggcactaccagtcttacaacagcacagaaggccgtt
cactgcaatccgcattcagccgcttcgtggtccgtcttgcttgcagctgcccttcctttc
tggagtggaacgggcattggtaatgatcggattcaacggctaggttggctaaagaaattg
atcgaacatttgcgccgcaaatgcgatgtgacggtgtattcccgtttaacgccatggctt
ggccattacgaacgccggttggtttcattcttgagccaatcttga
DBGET
integrated database retrieval system
