Daphnia carinata: 130696247
Help
Entry
130696247 CDS
T11669
Name
(RefSeq) paired amphipathic helix protein Sin3b-like
KO
K11644
paired amphipathic helix protein Sin3a
Organism
dcar
Daphnia carinata
Pathway
dcar04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
dcar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
130696247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcar03036
]
130696247
Chromosome and associated proteins [BR:
dcar03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
130696247
REST complex
130696247
Heterochromatin formation proteins
Other heterochromatin formation proteins
130696247
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
HHD_RTEL1
PAH_ZNF598
Tantalus
Motif
Other DBs
NCBI-GeneID:
130696247
NCBI-ProteinID:
XP_057375312
LinkDB
All DBs
Position
5:complement(1138489..1146417)
Genome browser
AA seq
1482 aa
AA seq
DB search
MKRNEDSIHLPSAVESVARPLGGSIQSGRISPTPPMVNAVLAGDLRNTANQLQEPSIAAS
MATFSTSGFVAAANGSTTVTIGPLGTSPPVPFSTAIQTTKAPSNTGGVSQVVAQQQHIFH
QSLAHQQARHSLAIATAPAGSPPISIQSTAQQQTQQQQQSSMQQAFQQMTAGPHGPGAQQ
FQRLKVEDALSYLDQVKYKFGNQPQVYNDFLDIMKEFKSQSIDTPGVIARVSSLFRGHPE
LIVGFNTFLPPGYKIEVQAEQVSVSVPGSLGVPAHIHHITHGPIPITTTTTQQLDMAARS
TPPIQQVSITTVPQLTVAPPIQQVPAASVPVKEVVSAAKTAGTSPISSTGSISTAAPTYS
LSSQQKESSSSSPQLGSAAHGYANSSSQGAAAVVSAAFGVPNASQPVEFNHAINYVNKIK
NRFQGQPDIYKQFLEILHTYQKEQRSLKEGLVSPLNYRPTLTEAEVYAKVAQLFQNQEDL
LQEFGQFLPDATNVTRGGNCGSSLVPVTLPAIPTGQTKKPSPVTEPSKPPAIASGNLTGS
AVAPPAKAPLKRPAPPPIVSSPAVGMNLIPKKKPRLDPGSGKDHSIADVGKFGTMSELAF
FDKVRRVACRSRDVYENFLRCLVMYNQEIISKMELLQITTPFLSRHPDLLKWFKDFLGLK
EGTGVGGYLAHVEAQPISLIRSRMEREMYPSTKDGKESRDHDMQAMEIDYSTCKRLGTSY
CALPKSYEPPKCSGRTPLCKEVLNETWVSFPTWSSEDSTFVSSRKTQYEEYIYRTEDERY
ELDIVLETHMSTIRVLEGVMKKLNHRMNAEEANRFKLDDCLGGSSPTIHIRAIRRIYGDK
ATEIIEGLKRSPQVAIPVVLRRMKAKEEEWREAQKGFNKIWRDQNEKYYLKSLDHLGTNF
KQNDVKALRSKALINEIETIFEERNEENANKTDMGRSTNVSNGPHLKLAYKSRRKVLDDA
ADLLIHHAKRQTGITKEDKRRIKTLLRHTVPDLFRHPRQELSEDERENDDDDDAEDKDSH
EHDTATKREKRKSSKMTNGGRGNTKVPALAMLASMDDEYTLFLANSHWYVFLRLHHILCE
RLTKIGDRASILLQEEKEEIAKSRSRSNGRHRENDSVAVALRLKPKAEVEIDQYYSHFLS
MVKNLLDGNIEALQFEDSLREMFGIHAYSAFTLDKVIANAVRQLGHLVTDQTCLQCTEIF
LEEHGLKGSSKGLLTEDGSNDEGKQSAAEMSYQRRMEQLLADENLFRIVLWHKNEETTIA
IEMLDTDTHSSCSGDNPPLQDVRNWSNYVEGYVSDRMDQVMSEKARRKNTDPSLSAAHSR
VRKPVFLQRNLKQWERRRRKDGSVKASRSKNSDTPVDADDTTQKDVTLSEDAHCVFNVNS
YQMVFVANSESVLYKRHAFTRAKQCHKAVTLRMRKHFLVWRERWSAAHVTADAEKATANW
LLGKGDHLELKADSRTVKLVNHVDKRAPFGTLIKYRVDYDKS
NT seq
4449 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcaacgaagattccatacatttaccctctgccgttgagtcagtagcacgacca
ttaggtggatcaatccagtctggccggatctctcctacgcctcctatggtgaatgctgta
ctagctggggacttgaggaatactgcaaatcaattgcaggagccttctatagcagcaagt
atggccacgtttagtaccagtggatttgtggcagcagcgaatggcagtaccactgtcact
attggtcctttaggcaccagtccaccagtgccattctctactgctatccaaacaacaaaa
gccccatccaatactggtggtgtgtcacaagtggtggcacagcaacaacacatcttccat
cagtcacttgctcatcaacaagctcgtcatagtttggctattgctacagccccagctgga
tcacctccaatatcaattcagtcgacagcccagcagcagacacagcaacagcaacagagc
tctatgcaacaggcattccagcaaatgacggctggtcctcacggcccaggagcgcagcag
tttcagcgtttgaaagtggaagatgccctttcatatttggatcaggtcaaatacaaattt
ggcaatcaacctcaggtttataatgatttccttgacatcatgaaggaatttaaatctcag
agtatcgatacacccggtgttattgcacgtgtttcttcgttattccgtggacatccggag
ctcattgtggggtttaacaccttccttcctcctgggtacaagatagaagttcaagccgag
caggtttctgttagtgtgccaggcagtctgggtgtccctgctcacatacaccatattaca
catggtccaataccaataacgactaccaccacccaacaacttgacatggctgctcggagc
acgccaccaatccaacaagtcagcataactaccgttcctcagttaactgtcgctccgcca
atccagcaggttccagcagcatccgttcctgtcaaagaagttgtatctgcagctaaaaca
gcaggaacttcccccatatcaagtaccggatccatttcgacagcagctcctacatacagt
ttgagttctcaacagaaggaatcgtcttcatcgagtcctcaattaggttccgcagcccat
ggatatgccaatagctcgtcgcagggtgcagctgctgtagtcagtgctgcatttggagtc
ccaaatgcgtcgcaaccagttgaatttaatcatgccattaattacgtcaacaagattaaa
aaccgcttccagggccaacctgatatctataaacagttccttgagatactgcatacgtat
caaaaggaacagcggtctttgaaagaaggcctcgttagcccattaaactatcggcctacc
ttgactgaagctgaagtctatgctaaagtcgctcaactctttcaaaatcaagaagacctc
ttacaggaatttggccaatttttacctgatgctactaatgtaacgcgcggaggtaattgt
ggtagtagcttggtaccggttactctaccagccatcccaacgggacagaccaagaagccc
agccctgttacagagccatctaaacctccggctatagcaagcggtaatttaactggatcg
gcagtggcaccgccggcgaaagcaccacttaaacggccggcgcctcccccaattgtatca
tctccggccgtcggtatgaatctgataccgaagaaaaagcctcgactagatcctggtagt
ggaaaagatcattcgattgccgacgttggaaagtttggtaccatgagcgaattggccttc
ttcgacaaagttcggcgcgtagcttgtcggtcccgtgacgtttacgaaaacttccttcgc
tgcttggtcatgtataaccaagaaattattagcaaaatggaattgctccaaatcactacc
cccttccttagtcgccatcccgatctgctcaagtggtttaaagacttcctcggacttaaa
gaaggaacaggcgtagggggctacctggctcatgttgaagctcaacccatcagtttaatt
cgttcgcggatggaacgcgaaatgtacccttcaaccaaggatggaaaggaatcgcgggac
cacgacatgcaagccatggagattgattactctacgtgcaagcgcctcggcacatcttat
tgcgcactacctaagagctacgaacccccgaagtgctccggacgaacgcctctgtgcaaa
gaggtgctaaacgagacgtgggttagttttcccacgtggtccagtgaagattcaactttt
gtcagctcacgcaagacgcaatacgaagaatacatttaccggacggaagatgaacgctac
gagttggatattgtgctagagactcacatgagcacaatccgcgtcctagaaggtgttatg
aagaaactgaatcaccgaatgaatgctgaagaagcaaaccgcttcaaattggatgactgt
cttggcggatcttctccaaccatccacatcagagctattcggcgtatttacggagacaaa
gccaccgagatcatcgaagggttgaagcgaagtcctcaggtggcaattccggttgtgctg
cgccgcatgaaagctaaggaagaagagtggcgcgaagctcagaaagggttcaacaaaata
tggcgtgatcagaatgaaaagtattatctcaagagcctcgaccatctaggaactaatttc
aagcaaaatgacgtaaaggcgctacgctctaaggcgcttatcaacgaaattgagactatc
tttgaagagcgtaacgaagagaacgccaacaagacggatatgggtcgttcaactaatgtg
agcaatgggcctcatcttaagttggcttataagtcacgacggaaggtgctggacgacgca
gcagatctcctgattcatcatgccaaacgccaaactggaattactaaagaagacaaacga
cgcataaaaacactattgagacatacggtgcccgatcttttccgtcatcctcgccaggaa
cttagcgaagacgaaagagaaaatgatgatgacgacgatgcggaagataaagattcacat
gaacacgacacagctacgaagagggagaaacgaaagagcagcaaaatgacaaatggcggt
cgcggaaatacgaaggttccggccttagcaatgttagcctcaatggacgacgagtacacg
ctcttcctggccaacagtcactggtatgtcttcctccgcttgcatcacattttatgtgaa
cgactcaccaagattggggatcgtgcatccatccttcttcaagaggaaaaagaagagatt
gccaagtctcgttctcgctcaaacggtcgccacagggaaaacgacagtgtggctgtagca
cttcgactcaaaccgaaggccgaagtcgagattgatcagtactactcacacttcctttcg
atggtgaagaatctgttggacggcaacatcgaggcactgcaatttgaagattcgcttcgt
gagatgtttggcatccatgcttactctgcgtttactcttgataaagtcatcgccaacgcc
gttcgtcagctgggtcatttggtcaccgatcagacgtgcttgcagtgtaccgaaatattt
ctggaagagcatggtcttaaaggttcatcgaagggtctgctgactgaggatggatcaaat
gacgaaggcaagcaatctgcagctgaaatgtcttatcagcgaagaatggagcagttgtta
gctgacgaaaatctttttagaattgttttatggcacaaaaatgaagaaaccacaatcgcc
attgaaatgctcgacaccgacactcactcaagttgctcaggagataacccgccattgcaa
gatgtgcgtaactggtcaaattacgtcgaaggatacgtttcagatcgcatggatcaagtt
atgtcggagaaagccaggcgaaaaaatacagatccatcattgagcgcagcccattcccgc
gtaagaaaaccagttttcctacaaagaaatctgaaacaatgggaaaggcggcgacggaaa
gatggctccgttaaagcgtcacgttctaagaattccgacactcctgtggacgcggacgac
actacacagaaggacgttacattaagcgaggatgctcactgtgtgttcaacgtcaattca
tatcaaatggtttttgtggccaatagcgagagtgtattgtacaagagacatgcgttcacc
cgagccaaacaatgccacaaagcagtaacgctacggatgagaaaacactttctagtttgg
cgtgaacgctggtcggcagctcatgtgacggcagatgccgaaaaggcgacggcaaactgg
cttctgggcaaaggtgaccacttggaactgaaggcagacagcagaactgtcaaacttgta
aatcatgttgacaagcgtgctccttttgggacgctcataaagtatcgtgtcgactacgac
aagagttga
DBGET
integrated database retrieval system
