Daphnia carinata: 130700229
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Entry
130700229 CDS
T11669
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1-like isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
dcar
Daphnia carinata
Brite
KEGG Orthology (KO) [BR:
dcar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcar03019
]
130700229
03041 Spliceosome [BR:
dcar03041
]
130700229
Messenger RNA biogenesis [BR:
dcar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
130700229
Spliceosome [BR:
dcar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
130700229
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_5
RRM_10
RRM_MUD2_C
Mdt30
RRM_ACIN1
RRM_3
RRM_PARP14_3
RRM_MARF1
THOC2_N
Otopetrin
Motif
Other DBs
NCBI-GeneID:
130700229
NCBI-ProteinID:
XP_057378244
LinkDB
All DBs
Position
8:6991541..7050783
Genome browser
AA seq
475 aa
AA seq
DB search
MLAAMSTLMMPAAAMTLAGHHNLHHHHPGAAAALAGALQHQHQPHHHHPHHHHHHHHQQQ
QQQQQQQQQQQQQQHQLHQPHQQHQSHQPKPADLLSIAAAAAAAAGTHSTAASLPVAHLA
LKSASVNGHGGGSGGGGGGSGGSSSSASSGGGSAGSGTANGHCQNSNEHFHIFVGDLSPE
IETHTLRDAFAAFGEISDCRVVRDPQTLKSKGYGFVSFVKKSDAENAIAGMNGQWLGTRA
IRTNWATRKPPAPKDAGSKPMSYDEVFGQSSSTNCTVYCGNLAQGTTEESLQKIFGPYGQ
IQEIRVFKDKGYAFIRFASKESATQAIVSVHNTDLNGQNVKCSWGKEPGEPGSANNAQLM
TGGLGPTNTQYPYGYNQGMSYWYPGGYPPQMQSQFVQGMQGYAAYGQFGYQPGMGMQLPG
GWQSVQAQAGAGQQMAAAAAAAAAVSQQGGMVASYPIQQFQVFPPLAVHQSALTL
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgctggcagccatgtcgacgctgatgatgccggccgccgccatgaccctggccggtcat
cacaacctccaccatcaccacccgggagcggccgccgctctggccggcgctctacagcac
cagcaccagccgcaccatcaccatccgcaccaccaccaccaccaccaccaccaacaacaa
caacaacaacagcaacagcagcaacagcaacaacaacagcaacatcaacttcatcagccg
catcagcagcaccagtcgcaccagccgaagccggccgatttgttgagcattgccgccgcc
gccgccgccgcggccggcactcactcgacggccgcctcgctgcccgtcgctcacttggcc
ctcaagtcggccagcgtcaacggccacggcggcggcagcggcggcggcggcggcggcagc
ggcggcagcagcagcagcgccagcagcggaggaggcagcgccggcagcggcacggccaac
ggccactgtcagaacagcaacgaacatttccacattttcgtgggggacctgagcccggaa
atcgagacgcacacgctccgcgacgcctttgccgctttcggagagatctcagactgccgc
gtggtgcgagacccccagacgctcaaatccaagggttatggattcgtttctttcgtcaag
aaatcggacgccgagaacgccatcgccggaatgaacggacagtggctaggaacgcgggcc
atccgcaccaactgggccacccgtaaaccgcccgctcctaaagatgccggatcgaagccc
atgtcgtacgacgaagtctttggccagtcgtcgtccaccaactgcaccgtctattgcggt
aacctggcccaaggcactaccgaggagtcccttcaaaagattttcggcccttacggccag
atccaggagatccgcgtcttcaaagataaaggatacgcctttatcagattcgcctccaaa
gagtcagccacacaagccatcgtctcggtccacaatacagacttgaacgggcaaaatgtc
aaatgctcctggggcaaggaaccgggcgagcccggtagcgccaacaatgcccagctgatg
acgggcggactaggtccaaccaatacccagtacccgtacggctacaaccaaggcatgagc
tactggtacccgggtggctacccgccgcaaatgcagtcgcagtttgtgcagggaatgcag
ggctacgcggcttacggccagttcggctaccagcccggcatgggcatgcagctgccgggc
ggctggcagagcgtccaagcgcaggcgggagctggccagcagatggcggccgcggcagcc
gctgccgccgccgtatctcaacaaggcggtatggtggcctcctaccccattcagcaattc
caggtatttccgcccctggccgttcaccaaagcgccctcaccctctga
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