Solidesulfovibrio carbinolicus: C3Y92_06595
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Entry
C3Y92_06595 CDS
T06503
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dcb
Solidesulfovibrio carbinolicus
Pathway
dcb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dcb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C3Y92_06595 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcb03021
]
C3Y92_06595 (rpoC)
03400 DNA repair and recombination proteins [BR:
dcb03400
]
C3Y92_06595 (rpoC)
Enzymes [BR:
dcb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C3Y92_06595 (rpoC)
Transcription machinery [BR:
dcb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C3Y92_06595 (rpoC)
DNA repair and recombination proteins [BR:
dcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C3Y92_06595 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Blo-t-5
DltD
Motif
Other DBs
NCBI-ProteinID:
QAZ66921
UniProt:
A0A4P6HIE3
LinkDB
All DBs
Position
1502296..1506462
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AA seq
1388 aa
AA seq
DB search
MSLDELFSMRGIGQTAVSSRTLKSIRISIASPEKIREWSFGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKTLPSKIGTLLDMTMVDLEKVLYFDSYLVLDPKDTNLTKFQVISEEQYIQVIDHYGGE
DALVVGMGAEAVRGLLEEIDLLTLRAELREESMTTKSQTKKKKIIKRLKVVEAFIESANK
PEWMIMEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELGAPDIIIR
NEKRMLQEAVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRS
VIVVGPRLKLHQCGLPKKMALELFKPFIYSKLEEKGLATTIKTAKKMVEREELVVWDILE
DVVREYPILLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLS
VEAQIECRVLMMSTNNILSPANGTPIIVPSQDIVLGLYYLTIERSFAQGEGKVFADTGEV
ICAVDAGVVSLHARITCRINGERVKTTPGRIIVGELMPEGVPFELVNTVLNKRSIGKLVG
DTYRMAGTKATVILCDRLKDLGYEYATRAGVSIGVKDLAIPSTKARLLEASQKEVDDIEI
QYGEGIITRTEKYNKVVDVWTKATNDVATEMMKEISWDTLTDEASGRVEKNTSSNPIFMM
IHSGSRGNQDQMRQLAGMRGLMAKPSGEIIETPITSNFREGLSVAQYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVVQDVIITEIDCGTVDGLEITHYVKAGDIKQRVHERALGRTCM
FDVYDPVTDEVIIPTNALIDEHYAQVIEDKGFSSLMIRSTLTCQSKHGVCAMCYGRDLAR
GHLVNVGETVGIIAAQSIGEPGTQLTMRTFHIGGTAAREIAQSSVTAQHSGRIVLSRVKS
IVNQQGHTIMMGKSGQVSVVDDQGRERERYSLPSGAKLYAVAGQEVKKDQLLAEWDPFNE
PFVTDVAGVIKFTDIVEGKTYQEKVDDATKRATQTIIEYRTTSYRPSVSIVDERGNPKYR
PGTNTPAIFSMPVGAILMLRDGQEVFEGDIIARKPRESSKTKDIVGGLPRVAELFEVRKP
KEMAVVSEIDGLVSFGPETKGKRKIIVTPEAGDPKEYLIPRGKHVTVQEGDFVEAGELLT
EGYPELHDILKIKGEKFLAKYLVDEIQDVYRFQGVGINDKHIEIIVRQMLKKVSILDSGE
TNFLIGEQVDKIRFMEENARVMEEGLKPAMAEPLVLGITQASLSTDSFISAASFQETTKV
LTEASLMGKDDSLRGLKENVIVGRLIPAGTGYRRYMDSEIAVPRQPERPDRFLEELEESP
IVGSIDLD
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgtccctggacgaattgttcagcatgcgcggcatcggccagaccgccgtgtccagccgt
acgctcaaatccatccgcatatccatcgcctctcccgaaaagatccgggaatggtcgttt
ggtgaagtcaaaaagcccgagaccatcaactaccggacgttcaagcccgagcgcgacggc
cttttttgcgccaagatcttcggaccggtcaaagactacgagtgcaactgcgggaagtac
aagcgcatgaagcaccgcggcatcgtgtgcgaaaaatgcggcgtcgaagtcatcgcctcc
aaggtccgccgcgagcgcatgggccacatcgaactggccgccccggtggcccatatctgg
tttttgaagaccctgccgtccaagatcggcaccctgctcgacatgaccatggtggacctg
gaaaaggtcctctatttcgattcctatctggtgctcgaccccaaggacaccaacctcacc
aagttccaggtcatttccgaggagcagtacatccaggtcatcgaccactacggcggcgag
gacgctctggtcgtgggcatgggcgcggaagccgtgcgcggcctgcttgaggagatcgat
ctgctgacccttcgcgccgagctgcgcgaagagtccatgaccaccaagtcgcagaccaaa
aagaaaaagatcatcaagcgcctcaaggtcgtcgaggccttcatcgaatcggccaacaag
cccgagtggatgatcatggaagtcattccggtcatcccgcctgagctgcgccccctggtc
cccctggacggcggccgtttcgctacctccgatttgaacgacctctaccgacgcgtgatt
aaccgcaacaaccgcctcaagcggctcattgagcttggcgcgccggacatcatcatccgc
aacgaaaagcgcatgctccaggaagccgtggatgcgctctttgacaacggccgtcgcggt
cgggccatcaccggcaccaacggccggccgctcaagtcgctgtccgacatgatcaagggc
aagcagggccgcttccgccagaacttgctcggcaagcgcgtcgactattccggccgttcg
gtcatcgtcgtcgggccccggctcaagctccaccagtgcggcctgcccaaaaagatggcc
ctggagctgtttaagcccttcatctattccaagctggaagaaaaggggctggccaccacc
atcaagacggccaagaagatggtcgagcgcgaagagctggtggtctgggacatcctcgaa
gacgtggtgcgcgagtacccaattcttcttaaccgcgccccgacgctgcaccgcctgggc
atccaggcctttgaaccgacgctggtcgaaggcaaggccatccagctgcatccgctggtc
tgctcggcctacaacgccgacttcgacggcgaccagatggccgtccacgtgcccctgtcc
gtggaagcccagatcgaatgccgcgtgctcatgatgtccaccaacaacatcctttcgccg
gccaacggcacgcccatcatcgtgccgtcccaggatatcgtccttggcttgtactatctg
accatcgaacgcagcttcgcccagggcgagggcaaggtctttgccgacaccggcgaggtc
atctgcgccgtggacgccggggtggtcagcctgcacgcccgcatcacctgccgcataaac
ggcgagcgggtcaaaaccacgccgggccgcatcatcgttggcgaactcatgcccgagggc
gtgcccttcgagctggtcaacaccgtgctcaacaagcgcagcatcggcaagctcgtgggc
gacacctaccgcatggccggcaccaaggccacggtcatcctgtgcgaccgcttaaaggac
ctcggttacgagtacgcgacgcgcgccggcgtctccattggcgtcaaggacctggccatt
ccgtccaccaaggcccgtttgctggaagcctcccagaaagaggtggacgacatcgaaatc
cagtacggcgaaggcatcatcactcgtaccgagaaatacaacaaggtcgtcgacgtctgg
accaaggccaccaacgacgtggccacggaaatgatgaaggagatctcctgggatacgctc
accgatgaagcctccgggcgggtggagaagaacacctccagcaacccgatcttcatgatg
atccactccggttcgcgaggcaaccaggaccagatgcgccagctggccggcatgcgcggc
ctgatggccaagccgtccggcgaaatcatcgagacgcccatcacctcgaacttccgcgag
ggcctgtcggtcgcccagtacttcaactccacccacggcgctcgaaagggtctggccgat
acggcccttaagaccgccaactccggttacctgacccgtcgtctcgtcgacgtcgtccag
gacgtcattatcaccgagatcgactgcggcactgtcgatggcctggagatcacccactac
gtcaaggccggcgacatcaagcagcgcgttcacgagcgcgccctgggccggacctgtatg
ttcgacgtctacgatccggtcaccgacgaggtcatcatcccgaccaacgcgctcattgac
gagcactacgcccaggtcatcgaagacaagggcttcagctcgctgatgatccgctcgacc
ctgacctgccagtccaagcacggcgtgtgcgccatgtgctacggccgcgacctggcccgg
ggacacctggtcaacgtcggcgagaccgtgggcatcatcgccgcccagtccatcggcgag
ccgggcacccagctcaccatgcgcaccttccacatcggcggcacggcggcgcgcgaaatc
gcccagtcgtcggtgacggcccagcacagcggccggatcgtgctgtctcgcgtcaagtcc
atcgtcaaccagcagggccacaccatcatgatgggcaagtccggccaggtgtcggtggtc
gatgaccagggccgcgaacgcgagcgctacagcctgccctcgggcgcgaaactgtacgcc
gtggccggccaggaagtgaaaaaagaccagttgctggccgaatgggatccgttcaacgaa
ccgtttgtcaccgacgtcgccggtgtgatcaagttcaccgacatcgtggaaggcaagacc
taccaggagaaggtggacgacgccaccaagcgcgccacgcaaaccatcatcgaataccgc
accacctcgtaccgtccgtcggtctccatcgtggacgagcggggcaatcccaaataccgg
cccggcaccaacaccccggccatcttctccatgccggttggcgcgattctcatgttgcgc
gacggccaggaggtcttcgaaggcgacatcatcgcccgtaagccccgcgagtcctccaag
accaaggacatcgtcggcggtcttccccgcgtcgccgagctgtttgaagtccgcaagccc
aaggaaatggcggtcgtctcggaaatcgacggtctggtctcctttggcccggaaaccaag
ggcaagcgcaagatcatcgtcacccccgaggccggcgatcccaaggaatacctcattccg
cgcggcaagcacgtcacggtccaggaaggcgacttcgtggaagccggcgaactgctgacc
gaaggctacccggaactgcacgacatcctgaagatcaagggcgagaagttcctggccaag
tacctcgtggacgaaatccaggacgtgtaccggttccagggcgtgggcatcaacgacaag
cacattgaaatcattgtgcgccagatgctcaaaaaggtctccatcctcgattccggcgag
accaacttcctcattggcgagcaggtggacaagatccgcttcatggaagaaaacgcccgg
gtcatggaagagggcctcaagcccgccatggccgaaccgctggtgctgggtatcacccag
gcctcgctgtccacggattcgttcatctcggcggcctccttccaggagaccaccaaggtg
ctcaccgaagcctcgctcatgggcaaggacgactccctgaggggacttaaggaaaacgtc
atcgtgggccggctcatcccggccggcaccggctaccgtcgctacatggacagcgaaatc
gccgtgccgcgccagcccgagcgccccgaccggttcctggaagagctggaagaaagcccc
atcgtcggcagcatcgatctcgactag
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integrated database retrieval system
