Solidesulfovibrio carbinolicus: C3Y92_07700
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Entry
C3Y92_07700 CDS
T06503
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dcb
Solidesulfovibrio carbinolicus
Pathway
dcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3Y92_07700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcb03019
]
C3Y92_07700
03009 Ribosome biogenesis [BR:
dcb03009
]
C3Y92_07700
Enzymes [BR:
dcb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C3Y92_07700
Messenger RNA biogenesis [BR:
dcb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C3Y92_07700
Ribosome biogenesis [BR:
dcb03009
]
Prokaryotic type
rRNA processing factors
C3Y92_07700
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
EntA_Immun
S1
AF0772_C
DUF5351
Motif
Other DBs
NCBI-ProteinID:
QAZ69469
UniProt:
A0A4P6I5T2
LinkDB
All DBs
Position
1762577..1764040
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AA seq
487 aa
AA seq
DB search
MSRGKKRKQKMFISVLPGEQVEVAVAEDGQLLEYYVEMVHQAKTRGHIYKGKIHNIDPAL
QAAFINYGAERNGFLQIDEVHPEYYQIVQAGGDRRPKYPPIQKALKKNQELLVQVVKEPT
GHKGAFLTTYLSLPGRYFVLTPGREQRGVSRKIEDEAERKRLKEVISGLKLDEGLGLIVR
TAALSQSKTSLERDLSYLKRLWKEVRQRGTTAETPSLIYQELDLSSRAVRDYLTDDVGEI
WVDEPETAKRVSEMATLVYPRRPGIVKQHPDVDVPLWDRFNLRKQIEQLYGREVTLPSGG
VLVFDHAEALTAVDINSGKIGGESNFREMALKTNIEASEEVARQLRLRDIGGQVVIDFIE
MKDRKHVAEVEKTLRAAFKNDRARTDVGRISRFGLLEIVRQRLGSSALSITSEPCPCCNG
SGQRRNHEWQALTVLKDIYRQLRKDSSQETVTAKVSEELSRYLLNHKRARLSAMEEEFKK
KIVINAL
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgagcagagggaagaaacgcaagcagaagatgttcatcagcgtgctgcccggcgaacag
gtcgaggtggccgtggccgaggacggccagctgttggaatactacgtcgagatggtccac
caggccaagacgcggggccacatctacaagggcaagatccacaatatcgatcccgccctg
caggccgcgtttattaattacggggccgagcgcaacggctttttgcagatcgacgaggtg
caccccgagtactaccagatcgtgcaggccggcggcgaccgccgtcccaagtatccgccc
atccagaaggcgctgaaaaaaaatcaggagctccttgtccaggtcgtcaaggaacccacg
ggccacaagggcgcgtttctcaccacctatctgtccctgccgggccgctatttcgtgctg
accccgggccgggagcagcggggcgtgtcgcgcaagatcgaggacgaggccgaacgcaag
cgcctcaaggaagtcatttccggcctcaagctcgacgagggcctgggccttattgtccgc
accgccgccctgtcccagtccaagacgtcgctggagcgcgatctttcgtatctcaagcgc
ctgtggaaggaagtgcgccaacgcggcaccacggccgagacgccaagcctcatttatcag
gaactcgacctgtcctcccgggccgtgcgcgattacctgaccgacgacgtgggcgaaatc
tgggtggacgaacccgagacggccaagcgcgtgtcggaaatggccaccctggtctatccg
cgccgcccgggcatcgtcaaacagcatcccgacgtggacgtgcccttgtgggaccgcttc
aatttgcgcaagcagatcgagcagctctacggccgcgaggtcaccttgcccagcggcggc
gtgctggtttttgaccacgccgaggcgctgactgccgtggacatcaactccggcaagatc
ggcggcgaatcgaatttccgcgagatggcgctcaagaccaacatcgaggcttccgaggaa
gtggcccgccagctgcggctgcgcgacatcggcggtcaggtggtcatcgactttatcgag
atgaaggaccgaaagcacgtggccgaggtggaaaagaccttgcgcgccgcctttaaaaac
gaccgggcccgcaccgacgtcggccgcatctcccgctttggcctgctcgaaatcgtgcgc
cagcgcctggggtcctcggccctgtccatcacctccgagccctgcccgtgctgcaacggc
tcgggccagcggcgcaaccacgagtggcaggcgctgacggtgctgaaagacatctaccgc
cagctgcgcaaggattcgagccaggagacggtgacggccaaggtctccgaggaactgtcc
cgctatctcctcaaccacaagcgcgcccgactctcggccatggaagaggaattcaagaaa
aagatcgtcataaacgccctgtga
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