Solidesulfovibrio carbinolicus: C3Y92_09940
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Entry
C3Y92_09940 CDS
T06503
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dcb
Solidesulfovibrio carbinolicus
Pathway
dcb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C3Y92_09940 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcb03400
]
C3Y92_09940 (mfd)
Enzymes [BR:
dcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C3Y92_09940 (mfd)
DNA repair and recombination proteins [BR:
dcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C3Y92_09940 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QAZ67527
UniProt:
A0A4P6HK71
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All DBs
Position
2290029..2293475
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AA seq
1148 aa
AA seq
DB search
MSRTASPLAELLAASDSASVYKSGPATLAYLAAAALARGQSAVVVAPGVHELSRIAALLD
MLAPPSPGTLWGASYAMLPSYAPGRPSGAFWARRMAFLAFAAMGKGPRVLLVTADNLLPK
WPPPRALEGNILNVAVGEELPRDLIAEQAVLWGYKRSPMVSSPGEFALRGDILDIFPPGY
ESPLRLEFFGDVLEAVRRFDAGTQRSLAELPEASLLPAAPAVLSETFMDEARTLWETIAG
TGELHRAAKQRLETALQVRDGGIWPGLFYEKPVELSAWFPQGAAYLVCDPTKVKERLEEA
EHAWRRFFEAETKELGHPWPNSRVLWPENMARKSLVAGRRILFEDLVMGRGRHGPDLPEK
ALERFGDLFWKPGSDKRPWTTLVAALKEWNGHGQTILSFHGERSRKKFLQMIEPEGLVFR
TGYHPDETGLFALLSPLRHGMELSWRDTRILAEDILHPESAKGGSERADKDFKGLASFDD
IRPGDLVVHRDYGVAAFEGLTRMTVDATGGDYLLLVFADEDKLYLPADRLGLLQRYKGPE
GISPPLDRLGGARWKSVRERAKKAVERIAADLVEMYAYRQVAKGYAYGPTNELYLEFEAT
FGFEETPDQERAIGEVLADMERPEPMDRLVCGDVGFGKTEVALRAAFRAVLDGKQVAMLC
PTTVLAEQHYQNFAARLEGFPVRVEMLSRFVSPKRRKVVLEAVSRGEVDILVGTHRILSS
DVAIPNIGLLILDEEQRFGVKHKERLKAFKKNIDALTLTATPIPRTLQLSLSGVRGLSVI
ETPPPDRKTVETALVERDEGFLREALRRELERQGQVFWVHNRVQGLEDVTAYVKTLAPGA
KVAMAHGQMSETALEEAMHGFWHGETDILVCTSIIESGLDFPRANTLIVDNAHMFGLGQL
YQLRGRVGRSPRQAYAYFVVPSIEKVPELARKRLRVILDMDYLGAGFQVAMEDLRLRGAG
NILGEAQSGHIARIGLDMFLEMLAEEVRRLKGEPVKERIETELTLGIAARIPERYVPEAS
DRLRLYKALSTAKTEERLAEIAAEMRDRFGPPPAEVDNFRAVLAFKQVLGRLGATKAEIA
PTRLTVAFEAEGASVSTERLVAFVAAHPAVRLLPPGKIVLPLDAALPVPEAIAVWSGELA
GLGEGEGA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
ttgtcccgcacagcttcgcccctcgccgaactcctcgccgccagcgattccgcctcggtc
tataaaagcggcccggccaccctggcctatctggccgccgctgccctggcccgggggcaa
tccgccgtggtcgtggccccgggcgtccacgaactttcgcgcatcgccgcgctgctggac
atgctggccccgccctcgcccgggaccctgtggggcgcgtcctacgccatgctgccgtcc
tacgccccgggccggccaagcggcgcgttctgggcccggcgcatggcctttctggccttt
gccgccatgggcaagggaccgcgcgtgctgctggtcaccgccgacaacctgctgcccaag
tggccgccgccgcgggcccttgagggcaacatcttaaacgtggccgtgggcgaggaattg
ccccgggatctcatcgccgaacaggccgtgctgtggggctacaagcgctcccccatggtg
tccagccccggagaattcgcccttcgcggcgacatcctcgacatctttccgccgggttac
gaaagtccgctgcggctcgaattttttggcgatgtcctggaagccgtgcgccgctttgac
gccggcacccagcgctccctggccgaactgcccgaagcctccctcctcccggccgccccg
gctgtgctgtccgaaaccttcatggacgaggcccggaccctgtgggagaccatcgcgggc
acgggcgagctgcaccgggccgccaagcaacgcctggaaacagccttgcaggtccgcgac
ggcggcatctggcccgggcttttttacgaaaaaccggtggaactctcggcctggtttccc
caaggcgcggcctatctcgtgtgcgaccccaccaaggtcaaggagcgcctggaagaggcc
gagcacgcctggcggcgttttttcgaggctgaaaccaaggagcttggccacccctggccc
aactcccgggtgctgtggcccgagaacatggcccgcaaatccctggtggccggccggcgc
attctctttgaggatctggtcatgggccggggccgccatggtccggatctgccggaaaag
gctctggaacgctttggcgaccttttctggaagcccggctcggacaagcgcccctggacc
accctggtcgccgccctcaaggaatggaacggccacggccagaccatcctgtccttccac
ggcgagcggtcccgcaagaaatttctgcaaatgatcgagcctgaagggctggtctttcgc
accggctatcatccggacgagaccgggcttttcgcgctgctctcgccccttcgccacggc
atggagctttcgtggcgcgacacccgcatcctggccgaggacatcctgcatcccgagtcg
gccaagggcggttccgagcgggccgacaaggacttcaagggcctggcctcctttgacgac
atccgtcccggcgatctcgtcgtccaccgcgactacggcgtggccgccttcgaggggctt
acccgcatgaccgtggacgccaccggcggcgattatctgctgctggtctttgccgacgag
gacaagctctacctgccggccgaccgtctgggcctgttgcaacgctacaagggacccgaa
ggcatttcgccgccgctggaccggctgggcggggcgcgttggaagtccgtgcgcgagcgg
gccaaaaaggccgtggagcgcatcgccgccgatctggtcgagatgtacgcctaccggcaa
gtggccaagggctacgcctacggccccaccaacgaactgtacctggaattcgaggccacc
ttcggcttcgaggaaacaccggaccaggaacgggccattggcgaggtcctggccgacatg
gaacggcccgagcccatggaccggctggtgtgcggcgacgtgggcttcggcaagaccgaa
gtggccctgcgggccgccttccgggcggtgctcgacggcaagcaggtggccatgctgtgc
ccgaccacggtcctggccgagcagcactaccagaatttcgccgcccggctggaaggcttt
ccggtgcgggtggagatgctctcgcgctttgtttcgcccaagcggcgcaaggtggtgctg
gaagccgtgtcgcgcggcgaggtggacatcctggtcggcacccaccgcatcctgtcttcc
gatgtggccatccccaacatcggcctgctcattctcgacgaggagcagcgctttggcgtc
aaacacaaggaacggctcaaggcgtttaagaaaaacatcgacgccctgacgctgacggcc
acgcccattccgcgcaccctgcagctgtccctttccggcgtgcgcggcctgtccgtcatc
gagacgccgccgccggaccgcaagaccgtggaaaccgccctggtcgagcgcgacgagggt
ttcttgcgcgaggcgctgcgccgcgaactcgaacgccagggccaggtgttctgggtccac
aaccgggtccagggcctggaggacgtgaccgcctacgtcaagaccctggctcccggagcc
aaggtggccatggcccacggccagatgtcggaaaccgccctggaagaggccatgcacggc
ttttggcacggcgagaccgacattctcgtgtgcacctccatcatcgaatccggcctggat
ttccctcgggccaacaccttgattgtggacaacgcccacatgttcggcctgggccagctc
taccagttgcgcggccgggtggggcgctcgccgcgtcaggcctatgcctacttcgtggtg
cccagcatcgagaaggtgccggagctggcccgcaagcgcctgcgcgtcatcctcgacatg
gactacctcggggccggcttccaggtggccatggaagacctgcgcctgcgcggggccggt
aacatcctgggtgaggcccagtcgggccatatcgcccgcattggcctggatatgttcctg
gaaatgctggccgaggaagtgcggcggctcaagggcgaaccggtcaaggagcgcatcgag
accgaactgaccctgggcatcgccgcccgcattcccgagcgctacgtgcccgaggcttcc
gaccgcctgcgcctgtataaggccttgtccacggccaagaccgaggagcggctggccgag
atcgccgccgagatgcgcgaccgctttggtccgcccccggccgaagtggacaatttccgg
gccgttttggccttcaagcaggtgctcggacgccttggcgcgaccaaggccgagatcgcg
cccacgcgtctgaccgtggccttcgaggccgagggcgcgtcggtttccactgaacggctc
gtcgccttcgtggccgcccatccggccgtgcgcctgctgccgccgggcaagatcgtgctg
ccccttgacgccgccttgcccgtgcccgaggccattgccgtctggtccggcgaactggcc
gggcttggcgaaggggagggggcatga
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