Solidesulfovibrio carbinolicus: C3Y92_11750
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Entry
C3Y92_11750 CDS
T06503
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dcb
Solidesulfovibrio carbinolicus
Brite
KEGG Orthology (KO) [BR:
dcb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dcb03016
]
C3Y92_11750
Enzymes [BR:
dcb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C3Y92_11750
Transfer RNA biogenesis [BR:
dcb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C3Y92_11750
Prokaryotic type
tRNA splicing ligases
C3Y92_11750
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QAZ67857
UniProt:
A0A4P6HL07
LinkDB
All DBs
Position
2660499..2661923
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AA seq
474 aa
AA seq
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MARLIPINTFTWELPQTGTMRVPAVFYGDKAAAKALEADVIRQLANVASLPGVVGPVVAL
PDAHPGFGFPIGCVAAFDPEAGGVVSAGGVGFDIACGVRTLLTDLSVEDVAPARDRIADA
LFARVPCGVGQGGALRLSDKDMDRMLRGGGAWAVGQGYGEAADLTRCEEGGTMAGADPGQ
VSAMAKDRQRDELGSLGSGNHYLEVQWVEDILDRASADAYGLRPGQVVVSIHCGSRGLGH
QVATDHMAAMRRAAPGHGIALPDPDLACAPIASAEGQAYLGAMRAAVNCALAGRQVITHL
VREVFGELFPGCRLPLLFDVSHNTCKAERHAVSGRPRTLYVHRKGATRAYGPGQADLPDF
CRNVGQPVIIGGSMGTASYVLAGGARAGELSFASACHGAGRAMGRKQAAKSFPSRKVLAE
LERVGVVLRAKSFKGIGEEAPGAYKDIDAAAAAAQALGLAVKTARLRPLACIKG
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggcacgcctgatccccattaacacctttacctgggagctgccccaaaccggaaccatg
cgggttccggccgtcttttacggcgacaaggcggcggccaaggccctggaggccgacgtt
atcaggcagctcgccaacgtcgccagcctgcccggcgtggtcggaccggtggtcgccctg
cccgacgcccatcccggcttcggctttcccatcggctgcgtggccgccttcgatcccgag
gccggcggcgtggtctcggccggcggcgtgggcttcgacatcgcctgcggcgtgcgcacc
ctgctgaccgatctctcggtggaggatgtcgccccggcgcgcgaccggatcgccgacgcg
ctttttgcccgcgtgccctgcggcgtgggccagggcggcgcgctgcgtctctccgacaag
gacatggaccggatgctgcgcggcggcggggcctgggccgttggccagggctacggcgag
gcggccgacttgacccgctgcgaggaaggcgggaccatggccggggccgacccggggcag
gtctcggccatggccaaggatcgccagcgcgacgaactcggcagcctgggttcgggcaac
cattatctcgaagtgcagtgggtggaagacatcctcgaccgggcctcggccgatgcgtat
ggcctgcgcccgggccaggtcgtggtctcgatccactgcggttcccggggcctgggacat
caggtcgcaaccgaccacatggccgccatgcgccgggccgcgcccggccacggcatcgcc
ctgcccgacccggacctggcctgcgccccgatagcttcggccgaaggccaagcctatctc
ggagccatgcgcgccgccgtcaactgcgccctggccggccggcaggtcatcacccacctc
gtgcgcgaggtctttggcgaactgtttcccggctgccgactgccgctgttgttcgacgtc
tcccacaacacctgcaaggccgagcgccacgccgtaagcggccggccccgcacgctctac
gtccaccgcaagggcgcgacccgggcctacggcccgggacaagcggacctgcccgatttt
tgccgcaacgtcggccagccggtcatcatcggcggcagcatgggcacggcctcctacgtg
ctggccgggggagccagggcgggggaattgtccttcgcctcggcctgccacggggccggc
cgggccatggggcgcaagcaggccgccaagagctttccgtcccggaaggtgctggccgaa
cttgagcgcgtcggcgtggtccttcgggccaaaagcttcaaggggattggcgaagaggct
ccgggagcctacaaggatatcgatgcggccgccgccgccgcccaggccctgggcctggcc
gtcaaaaccgccaggcttcgtcccctggcctgcatcaaggggtga
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