Solidesulfovibrio carbinolicus: C3Y92_17975
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Entry
C3Y92_17975 CDS
T06503
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dcb
Solidesulfovibrio carbinolicus
Pathway
dcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3Y92_17975 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcb03019
]
C3Y92_17975 (rny)
Messenger RNA biogenesis [BR:
dcb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C3Y92_17975 (rny)
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Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
MG280
ATPase_gene1
Motif
Other DBs
NCBI-ProteinID:
QAZ69023
UniProt:
A0A4P6HP30
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Position
complement(4085777..4087336)
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AA seq
519 aa
AA seq
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MEFSTIFMGIVGIGLGVPAGYYLDKWISQKTLNEARTLADRILDEARKEASAHKKEVVVA
AQDELFRQKQELEKEFRDKTQSLEEKEEQVHKRRERLEEKQELIVQKESEMLASEKRLTA
KERELAEKAEDLSRLADEHDKRLQEISGLTMEEAKKRLMDEIESKTRHEAARMVRQIEME
AKETADKSGKKILALAIQRYAGDFVGEQTVTAVTLPSEEMKGRIIGREGRNIRALEAATG
VDLIIDDTPETVILSAFSPLKRQIAKMALERLITDGRIHPARIEDIVKKCEQELDVKIRE
IGEQATFDCGVHGIHPELVRLLGQLQYRTSYSQNVLQHSLEVASLAGIMAAELGVDIKRA
KRAGLLHDLGKAVDHEIEGPHAVIGADLAKKFGESSDILHAIMAHHEDVPPKSILATLVQ
AADSLSGARPGARKELLESYVKRLEELENLALDFDGVSKAYAIQAGREVRVMVDSENVDD
DKTFLLCKDIAKRIEDNLTYPGQIRVTVIRERRAVGIAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcgaccatcttcatgggcatcgtgggcattggccttggcgtgccggccggc
tactatctcgacaagtggatttcccagaaaaccttgaacgaagccaggaccctggccgac
cgcattctggacgaggcccgcaaggaagcttccgcccacaaaaaagaagtcgtcgtcgcc
gcccaggacgagctgttccgccagaaacaggaactcgaaaaggaattccgcgacaagacc
cagtccctggaagaaaaagaagagcaggtccataagcgccgggaacgtctggaagaaaag
caggagctgatcgtccagaaggaatccgaaatgctggcttcggaaaagcggctcaccgcc
aaggaacgcgaattggccgaaaaggccgaggatctttcccggctggccgacgagcatgac
aagcggctccaggaaatctccggcctgaccatggaagaggccaaaaagcgcctcatggac
gagatcgagtccaagacccgccacgaggccgcccgcatggtccgccagatcgagatggag
gccaaggagaccgccgacaagagcgggaaaaagattctggccctggccatccagcgctat
gccggcgatttcgtgggcgagcagaccgtcaccgccgtgaccctgccctccgaagaaatg
aagggccgcatcatcggccgcgaaggccgcaacatccgcgccctggaagccgccaccggc
gtggacctcatcatcgacgacacccccgagaccgtcatcctgtcggccttttcgccgctc
aaacgccagatcgccaagatggccctggagcgcctcatcaccgacggccgcatccatccc
gcccgcatcgaggacatcgtcaagaagtgcgagcaggaacttgacgtcaagattcgggag
atcggcgagcaggccaccttcgattgcggcgtccacggcatccaccccgagctcgtgcgc
cttctcggccagctccaataccgcaccagctactcccaaaacgtgctccagcattccctg
gaagtggcctccctggccggcatcatggccgccgaactgggcgtggacataaaaagggcc
aagcgcgccggcctgctccacgatctcggcaaggccgtcgatcacgagatcgaaggcccc
cacgccgtcatcggcgcggacctggccaagaaattcggcgaatccagcgacatcctccac
gccatcatggcccaccacgaggacgtgccgcccaagtccatcctggccaccctggtccag
gccgccgacagcctctctggcgcgcgccccggagcccgcaaggaactcctggaaagctac
gtcaagcggctggaggaactggaaaacctggctcttgatttcgacggcgtgtccaaggcc
tacgccatccaggccggccgcgaggtccgcgtcatggtcgattcggaaaacgtcgacgac
gacaagaccttcctgctctgcaaggacatcgccaagcgcatcgaggataatctcacctat
cccggccagatccgcgtcacggtcatccgcgagcgacgggccgtgggcatcgccaaatag
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