Dermochelys coriacea (leatherback sea turtle): 119840973
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Entry
119840973 CDS
T09064
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X2
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119840973 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcc03041
]
119840973 (DHX38)
Enzymes [BR:
dcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119840973 (DHX38)
Spliceosome [BR:
dcc03041
]
Complex C
Other components
Step II factors
119840973 (DHX38)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
WHD_HA2
AAA_19
T2SSE
nSTAND_NTPase5
nSTAND3
PhoH
Flavi_DEAD
AAA_30
Microtub_bd
SRP54
Sigma54_activ_2
Toxin_trans_Wo
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
119840973
NCBI-ProteinID:
XP_038223691
LinkDB
All DBs
Position
12
Genome browser
AA seq
1237 aa
AA seq
DB search
MEDVPEDTSMHRLEGADLETQVGGLIIKKKSACSEQHVFKAPAPRTSLLGLDLLAAQKRR
EREEKEDTEDKKKSKVSSYKDWEESKDDLGGSEEEGSDRASRSSRQDRHYRSAHVETPSH
TGGVSEEFWERSRQRERERREHGVYASSKEEKEHKRGRNRERDHDRKRDREERDRSRHSS
SRSERDGSSERGSSRRGEPESPRHRPKDAATPSRSSWEEEDSGYGGSRRSQWESPSPTPS
YRDSERDRSHRASSARDADRRDRDRSVKNKYPDETPLPTPSYKYNEWADDRRHLGATPRL
SRGKGRREDAEEGISFETEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEEYVKK
REQHLHKQKQKRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAAKVHLLVH
NLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQLVRKHREQKERKKAQHKHWEL
AGTKLGDIMGIKKEEEPDQTLTEDGKVDYRTEQKFADHMKEKSEASSEFAKKKSIVEQRQ
YLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAA
MSVAKRVSEEMGVSLGEEVGYAIRFEDCTSENTVIKYMTDGILLRESLREADLDHYSAII
MDEAHERSLNTDVLFGLLREVVARRADLKLIVTSATMDAEKFASFFGNVPIFHIPGRTFP
VDVLFSKTPQEDYVEAAVKQTLQVHLSGAPGDILIFMPGQEDIEVASEQIVEHLEELEKA
PALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKV
FNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTN
LANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGAMDNTGGLTSTGRLMVEFP
LDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQVREKFAVPESDHLT
YLNVYLQWKNNSYSMLWCNQHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGSDWDIVR
KCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYM
QCVTSVDGEWLAELGPMFYSIKHAGKSRQENRRRAKEEVSAMEEEMALAEEQLRARREEQ
ERRNPLGSVRSLKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgtccctgaggacacttcgatgcaccggctggaaggagctgatctggagaca
caggttggaggcttgatcatcaagaagaaaagtgcctgcagtgagcagcatgtcttcaaa
gctccagccccccgcacctcactgctggggttggacttgctggctgcacagaaacgcagg
gagcgagaggagaaggaagacacagaggacaagaagaagtccaaagtctcctcctacaaa
gattgggaggagtccaaagatgatttgggaggctctgaggaggaggggagcgacagggcc
agcaggagcagccggcaggacaggcattaccgctctgcccacgtggagacgccgtcccac
actgggggggtcagcgaggagttctgggagcgcagccggcagcgggagcgggaacggcga
gagcatggtgtctatgcctcctccaaggaggagaaggagcacaagcgggggcgcaataga
gagcgggaccacgaccgtaaacgggaccgagaggagcgggacaggagccgtcatagcagc
agccggtcagagagggatggctcgtcagagaggggcagcagcaggaggggtgaaccagag
agccccagacaccgacctaaggatgcagccacaccatctcgctcgagctgggaggaagag
gacagtggctatggcggctcacggcgctcgcagtgggagtcgccttcccctacgccttcc
tatagggactccgagcgcgaccgcagccatcgggcatcctccgctcgtgatgcagacagg
agggaccgggacaggtcagtgaagaacaagtacccggatgagacaccgctgcccacccct
tcctacaaatacaatgaatgggctgatgaccggcggcacctgggggccactccacggcta
tccaggggcaaagggaggcgtgaagatgcagaagagggtatttcctttgagacggaggag
gagcggcagcagtgggaggatgaccagcggcaagccgaccgggactggtacatgatggac
gagggttacgacgagttccacaaccccttggcctactcatctgaggagtatgtgaagaag
cgggagcagcacttgcacaagcagaagcagaagcgcatctctgcacagcggaggcagatc
aatgaggacaatgagcgctgggagaccaatcgcatgctgacaagcggggtggtccatcgg
ctagaggtggatgaggactttgaggaagataacgcagccaaagtgcacctgctggtacac
aacctggtgcccccatttttggatgggaggatcgtcttcaccaagcagccagagccagtc
atcccggtcaaggatgccacttcggatttggcgattatcgcccgcaaaggcagccagctg
gtgcgcaaacacagggaacagaaggaacgcaagaaggctcagcacaagcactgggagctg
gctggcaccaaactgggagacattatgggtatcaagaaagaggaggagccggaccagact
ctgacagaagatggcaaggtggattacaggacagagcagaagtttgctgatcacatgaag
gagaagagcgaggccagcagcgagtttgctaagaagaagtcgattgtggagcagaggcag
tatctgcccatctttgctgtgcagcaggagctgctcaccataatcagggataacagcatt
gtcattgtggtgggggagactgggagtggcaagaccacccagctgacccagtacctgcat
gaggacggctacaccgactacggcatgatcggctgcacccagcctcgcagagtggctgcc
atgtcagtagccaagcgggtcagcgaggagatgggcgtgagcctgggagaggaggtgggc
tatgccatccgctttgaggactgcacatcagagaacacagtcatcaagtacatgacggac
gggatcctgctgcgggagtccctgcgcgaggccgacctagaccactacagcgccatcatc
atggatgaggcacacgagcgctcgctcaacacagacgtgctcttcggcctgctgcgggag
gtggtggcgcggcgtgcggacctgaagctcattgtcacctcggccaccatggacgcagag
aagtttgcctccttctttgggaacgttcccatcttccacattcctggccgcaccttccct
gttgatgtcctcttcagcaagaccccgcaggaggactacgtggaggctgcggtgaagcag
accctgcaggtgcatctgtctggggcccctggagacatcctcatcttcatgccaggccag
gaggacattgaggtggcctcggagcagatcgtggagcatctggaggaactggaaaaggcc
ccagctctggctgtgctgcccatctactctcagctgccctctgacctgcaggccaagatc
ttccagaaggctccggacggtgtcaggaaatgcattgtcgccaccaacattgcggagacc
tcgctgactgtggatggcatcatgtttgtcattgactctggctactgcaaactgaaggtc
ttcaacccccgcatagggatggatgccctgcagatctaccccatcagccaagccaatgcc
aaccagaggtcgggtcgtgctggccggacgggcccaggtcagtgcttcaggctctacacc
cagagcgcctacaagaatgagctgctgaccaccacggtgcctgagatccagcgcacgaac
ctggccaacgtggtgttgctgctcaagtctctgggcgtgcaggacctgctgcagttccac
ttcatggacccgccccctgaggacaacatgctgaactccatgtaccagctgtggatcttg
ggagccatggacaacacaggtggcctgacctcaacagggcgcctgatggtggagttcccg
ctggacccggcgctctccaagatgctcattgtctcctgtgacatgggctgcagctccgag
atcctgctcatcgtctccatgctctctgtgcccgccatcttctaccggcccaagggccgg
gaggaagagagtgaccaggtgcgggagaagtttgctgttccggagagcgatcacctgacc
tacctaaatgtttacttgcagtggaagaacaacagctactccatgctgtggtgtaaccag
cacttcatccacgccaaggccatgaggaaggtgcgggaggtgcgcgcccagctgaaggat
atcatggtgcagcagcgcatgagcctggcatcctgtggctcagactgggacatcgtcagg
aagtgcatctgtgccgcatacttccaccaggctgccaagctgaagggcattggggagtat
gtgaacatccgcaccggcatgccctgccacctgcaccccaccagctctctctttggcatg
ggctacactccagactacatcgtgtatcacgagctggtcatgaccaccaaggagtacatg
cagtgtgtcacgtccgtggacggagagtggctagcggagctgggccccatgttctacagc
atcaagcatgcggggaagtcgcgtcaggagaaccgccgtcgggccaaggaggaggtgtct
gccatggaggaggagatggctctggctgaagagcagctgcgagcacgccgggaagagcag
gagcgccgcaacccactgggcagcgtgaggtctttgaagatctatactccggggcgaaag
gagcagggggagcccatgacaccacgccgcactcctgcccgcttcggtctgtga
DBGET
integrated database retrieval system
