Dermochelys coriacea (leatherback sea turtle): 119842573
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Entry
119842573 CDS
T09064
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc03013
Nucleocytoplasmic transport
dcc03015
mRNA surveillance pathway
dcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119842573 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
119842573 (DDX39B)
03015 mRNA surveillance pathway
119842573 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcc03019
]
119842573 (DDX39B)
03041 Spliceosome [BR:
dcc03041
]
119842573 (DDX39B)
Enzymes [BR:
dcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119842573 (DDX39B)
Messenger RNA biogenesis [BR:
dcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119842573 (DDX39B)
Spliceosome [BR:
dcc03041
]
Complex C
Other components
EJC/TREX
119842573 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
119842573 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
119842573
NCBI-ProteinID:
XP_038226839
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All DBs
Position
14:complement(38861644..38871399)
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AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENQAGGDGVDVPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaatgacgtggataacgagctgctggattacgaggatgacgaggtggagaac
caggcggggggcgacggggtggacgtgccccccaagaaggacgtcaagggctcctacgtc
tccatccacagctctggcttccgggactttctgctgaaacctgagctcctccgcgccatt
gtcgactgcggcttcgagcacccctcggaagtgcagcacgagtgcatcccacaggccatc
ctgggcatggacgtgctgtgccaggccaagtcgggcatgggcaagacggccgtcttcgtg
ctggccacgctgcagcagctggagcccgtcacggggcaggtgtctgtgctggtgatgtgc
cacacgcgggagctggcgttccagatcagcaaggagtacgagcgcttctccaagtacatg
cccagtgtcaaggtggcggtgtttttcgggggcctgtccatcaagaaggacgaggaggtg
ctgaagaagaactgcccccacatcgtggtggggacgccaggccggatcctggccctggcg
cgcaacaagagcctcaacctcaaacacatcaagcatttcatcctggacgagtgcgacaag
atgctggagcagctcgatatgcgccgggacgtccaggagatcttccgcatgaccccgcac
gaaaagcaggtcatgatgtttagcgccaccctgagcaaggaaatccgccctgtctgccgc
aaattcatgcaagaccccatggagatcttcgtggacgacgagaccaagctgacgctgcac
ggcctgcagcaatactacgtcaagctgaaggacaacgagaagaaccgcaagctcttcgac
ttgcttgatgtgctggagttcaaccaggtggtgatcttcgtcaagtcggtgcagcgctgc
atcgcgctggcccagctgctggtggagcagaacttcccggccatcgccatccaccgaggc
atgccccaggaggagaggttgtcccgctaccagcagttcaaggatttccagcgccggatc
ctggtggccaccaacctcttcgggcggggaatggacatcgagcgggtcaacatcgccttc
aactacgacatgcccgaggactcggacacctacctgcaccgggtggcgcgcgctgggcga
ttcggcaccaagggcctggccatcaccttcgtgtcggacgagaacgacgccaagatcctg
aacgacgtgcaggatcgcttcgaggtgaacatcagcgaactgcctgacgagatcgacatc
tcctcctacatcgaacagacccgataa
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