Dermochelys coriacea (leatherback sea turtle): 119844477
Help
Entry
119844477 CDS
T09064
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119844477 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcc03041
]
119844477 (PRPF8)
Spliceosome [BR:
dcc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
119844477 (PRPF8)
Complex C
U5 SnRNP specific factors
119844477 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
119844477
NCBI-ProteinID:
XP_038231223
LinkDB
All DBs
Position
17:complement(516601..545295)
Genome browser
AA seq
2335 aa
AA seq
DB search
MAGVFPYRAGCAPVPSPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETCEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggctggagtgtttccttaccgtgcgggctgtgccccagtgcccagtcccttggctccg
ctgcctgactacatgtccgaagagaagctgcaggagaaagcccgcaaatggcagcagctg
caggcaaagcggtatgcggagaagcggaagtttggttttgtggatgcccagaaggaggac
atgcccccagaacacgtgaggaaaattatccgggaccatggtgacatgactaacaggaag
tttcggcatgacaagcgggtttatttgggtgccctgaagtacatgccccatgctgtccta
aagctcttggagaacatgccaatgccgtgggaacaaatccgagatgttccggtcttatac
catatcactggtgctatctccttcgtgaatgagattccatgggtcatagaaccagtctac
atctcacagtgggggtcaatgtggatcatgatgagacgagagaagagagacagacgtcac
ttcaaaaggatgaggttccctccatttgatgatgaagagccccctcttgactatgctgac
aatatcctggatgtggagcctctggaggcaatacagcttgagctggacccagaggaagat
gcccctgtcctggattggttctatgaccaccagccattgaaagacaacaggaagtatgtg
aacggttccacgtaccagcggtggcaattcactcttcccatgatgtccacattataccgg
ctagctaatcagctgctgacggatctcgtggatgacaactacttctacctgtttgatctg
aaggctttcttcacttctaaggctctgaacatggctattcctggggggcccaagttcgag
cctctggtcagagatattaacctccaggatgaagattggaatgaattcaatgacatcaat
aaaataatcatcagacagccaatcaggacagagtacaagattgccttcccatacctgtac
aacaacctgccacaccatgtgcacctgacctggtatcacactcctaatgtggtcttcatt
aaaacagaggatcctgacctgccagcattttacttcgatccattaatcaatcccatctct
cacaggcactctgtcaagagtcaggaacccttgcctgatgatgatgaagagtttgagtta
ccagaatttgtggagcctttcctgaaggacaccccgctgtacacggacaacacggccaat
ggcattgcactgctgtgggcccctcgaccctttaacttaagatctggcaggacacgcaga
gctctagacatcccattggtcaagaactggtaccgagagcactgcccagcagggcagccg
gtgaaagtgagggtctcctaccagaagctgctgaagtactatgttctgaatgcactcaag
cacagacctcccaaggctcagaagaagaggtacctattccgctccttcaaggcaacaaag
ttcttccaatcaacaaagctggactgggtggaggttgggctgcaggtgtgccgccagggt
tacaatatgctgaacttgctgattcataggaagaacctcaattatctccatctggactac
aatttcaatctcaaaccagtcaagaccctcaccaccaaggaaagaaagaagtctcgtttt
ggtaatgctttccatctgtgccgagaggttctgcgtttgaccaaactggtggtagatagc
catgtccagtacagactgggaaatgtggatgcatttcagttggcagatggcttgcagtat
atttttgcccatgtgggacagctgacaggaatgtacaggtacaagtacaaactgatgagg
cagattcgtatgtgcaaggacctgaagcatctcatctactacagatttaacactgggcct
gtggggaaggggcctggctgtggtttctgggctccaggctggagggtatggctgttcttc
atgagaggcattaccccactgttggagcgatggctgggcaacctgctggccagacagttt
gaaggccgacactcaaagggtgttgcaaagactgtaaccaagcagcgtgtggaatctcac
tttgacctggagctaagagctgcagttatgcatgacattctagacatgatgccagaggga
atcaagcagaacaaagctaggaccatcctgcagcacttgagtgaggcctggaggtgctgg
aaggccaacatcccctggaaggttcctgggctgccaactcctattgaaaacatgatcctg
agatacgtgaaggcgaaagctgactggtggactaacacagctcactacaacagagagcgg
atccgtcggggtgccactgtggacaagactgtgtgcaagaagaacctgggtcggctgacc
aggctttacctgaaagctgagcaggagaggcagcataattatttgaaggatggcccctac
atcactgcggaagaggctgttgcagtgtataccaccaccgtgcactggctggaaagcagg
aggttctcgcccatccccttccctccactctcctacaagcatgacaccaagctgctcata
ttggccttggaaaggcttaaggaagcctacagtgtgaaatcccgtctgaatcagtcgcag
agagaggagttgggccttattgagcaggcgtatgataatccccatgaagctctgtccaga
attaaacgacaccttctgactcagagagcctttaaagaggttggtattgagttcatggat
ctctacagtcacttggttcctgtttatgatgttgaacccttggagaagattacagatgcc
tatctggatcagtacttgtggtatgaggctgacaagcgaagactcttccctccttggatc
aaacctgctgacactgaaccgcctccactgctggtgtacaaatggtgccaaggcattaac
aatctgcaggatgtctgggaaacatgtgagggtgaatgtaatgtgatgctggagtcccga
ttcgagaagatgtatgagaagattgacttgacattgctcaacaggctcctgcgtcttatc
gttgatcataacattgctgactacatgacagctaagaacaacgtggtgatcaattacaag
gacatgaaccacaccaactcctatgggattattcgggggttgcagtttgcttccttcatc
gttcagtattatgggctggtgatggacctgttggtgctgggccttcaccgagccagcgag
atggccggcccaccacagatgccaaatgacttccttagcttccaagatattgccactgag
gtggcccatcccatccgcctcttctgcagatacattgaccgcattcacatcttcttcagg
tttacagcagatgaggcaagggacttgatccagcgctacctgacggagcatccagatccc
aacaatgagaacattgtgggctacaacaacaagaagtgctggccccgagatgcccggatg
cggctcatgaaacatgatgtgaatcttggccgtgccgtattctgggacattaagaaccgc
ctgcctcgctcagtcaccacagtgcagtgggagaacagctttgtatctgtttatagcaag
gacaatcctaacttgctgttcaacatgtgcggctttgagtgccgcatcctacccaagtgc
cgcaccagctatgaggagttcacccacaaggatggtgtgtggaacctgcagaatgaggtg
accaaggagcgcacagctcagtgctttctgcgtgtggatgatgagtctatgcagaggttt
cacaaccgagtgaggcagatactcatggcctctggctccacaaccttcacaaagattgtg
aacaaatggaacacagccctgattggcctgatgacgtatttccgggaggctgttgtgaac
acacaggagctgcttgacctgcttgtgaagtgtgagaacaagattcagacccgaatcaaa
attggcttgaactccaagatgccaagccgcttccccccagtagtattctacacccccaaa
gaactgggggggttgggcatgctgtccatgggccatgttcttattccccagtctgacttg
agatggtccaagcagacagatgtcggaatcactcacttccgctcagggatgagccacgag
gaagaccaactgatcccaaatctgtaccgctacatccagccatgggagagtgagttcatt
gactcacagagagtgtgggcagaatacgccctcaagaggcaggaggctattgcccagaac
aggcgtctgactctggaggatctagaggactcatgggacagagggattcctcgcattaat
accctcttccagaaagaccggcacacccttgcttatgataaaggctggagggtcaggaca
gacttcaaacagtaccaggttctgaaacagaacccgttttggtggacacatcagcgccat
gatgggaagctctggaacttgaacaactaccgcacagatatgatccaagcactgggtgga
gtggaggggatcctggagcacaccctcttcaagggaacctacttcccaacctgggagggt
ctcttctgggagaaggccagtggctttgaggagtcaatgaagtggaagaagttgacaaat
gcccagagatcgggtttgaaccagatccccaacagacgattcaccctctggtggtctcct
accattaacagagccaatgtgtatgtcgggtttcaggtgcaactagatttgacaggtatc
ttcatgcatggcaagatccccacgttgaagatttccctcattcagatcttccgagcccac
ttgtggcaaaagattcacgagagcattgtaatggatttgtgtcaagtgtttgatcaggag
ctggatgctctagagattgagactgtgcagaaggagaccatccatcccaggaagtcctat
aagatgaactcctcctgtgcagatatcctcctctttgcctcctataaatggaatgtgtca
cggccgtcgctgcttgcagactccaaggatgtgatggacagtaccaccactcagaaatac
tggattgatatccagctgcgctggggtgactatgactcccatgacattgagcgctatgca
agagccaagttcctggattacaccacggacaacatgagtatctacccctcccccactgga
gtgctcattgctattgatctggcctataacttgcacagtgcttatgggaactggttccca
gggagcaagcctctgattcagcaggctatggccaagattatgaaggcaaaccctgcactg
tacgtactgagggaacgtatccgcaaggggctacagctttactcatcagagcccacagaa
ccctatctctcctcccagaactatggggagctcttctccaatcagatcatctggtttgta
gatgacaccaatgtgtacagagttaccattcacaagacctttgaagggaacttgaccaca
aagcccatcaatggggccattttcatcttcaatcccaggactgggcagctcttcctaaag
atcatccatacatctgtgtgggcaggacagaagcgtctgggccagctggccaagtggaag
actgctgaggaagtggctgccctgattcgctccctccctgtggaggagcagcccaagcag
atcatagtcaccaggaagggcatgctggacccacttgaggtgcacttgctggatttccca
aacattgtgatcaaaggatcagagctgcagctgcccttccaggcctgcctgaaagttgag
aagtttggagatctcatcctgaaggctactgagccccaaatggttctcttcaacctttat
gatgactggctgaaaaccatctcctcctacacggcattctcacgtctgatcctgattctc
cgggcactgcatgtaaacaatgaccgtgccaaagtgatcctgaaaccagacaagaccacc
ataacggagcctcaccacatctggcccaccctgacagatgaggagtggatcaaggttgaa
gtgcagctcaaggacctgatcctcgcagactatgggaaaaagaacaatgtgaatgtggca
tctctgacgcagtcagagatcagagatattatcctggggatggagatctctgccccctct
cagcagagacaacagattgccgagattgagaagcaaaccaaggagcagtcgcagctgacg
gccacgcaaacccgcactgtcaacaagcatggtgatgaaatcatcacctccaccaccagc
aactatgaaactcagaccttctcctccaagacagagtggcgagtcagagcaatctctgct
gccaatctccacttgagaacaaaccacatctatgtctcgtctgatgacatcaaggaaacg
ggctacacctacatccttcccaagaatgtgctgaagaaattcatctgcatctcagatctc
cgggcccaaattgcagggtacctgtatggtgtgagccctccagataatccccaagtgaag
gagatccggtgcattgtgatggtgccccagtggggaactcatcagacggtgcatcttcct
ggccagttgccgcaacatgagtacctcaaggaaatggagcccctgggatggattcacaca
caaccaaatgagtcccctcagctctcgccacaggatgtcaccacacatgccaaggtcatg
gctgacaatccctcatgggatggggagaaaacaatcatcatcacctgcagttttacccca
ggctcctgtactctgaccgcctacaagctgactcccagtggctatgagtggggcaggcag
aacacagacaaaggaaacaaccctaagggctacctgccatcccactatgagagggtgcag
atgttgctgtcagaccgcttccttggcttcttcatggtaccagcacagggatcctggaac
tacaacttcatgggtgttcgtcatgatcccaacatgaagtacgagctgcagctagcgaat
cctaaggagttctaccatgaggtccatcgcccatctcacttcctcaacttcgccttgttg
caggaaggggaagtctactctgcagacagagaggatctctatgcatag
DBGET
integrated database retrieval system
