Dermochelys coriacea (leatherback sea turtle): 119844732
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Entry
119844732 CDS
T09064
Symbol
LIG3
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
119844732 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcc03400
]
119844732 (LIG3)
Enzymes [BR:
dcc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119844732 (LIG3)
DNA repair and recombination proteins [BR:
dcc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
119844732 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
119844732
NCBI-ProteinID:
XP_038231952
LinkDB
All DBs
Position
17:complement(20641518..20671569)
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AA seq
997 aa
AA seq
DB search
MPAVFKILFLQTARTLGRREGLCLPRRRAFLLRFESCLLHLLVASRFTWFRLLVRNKSFL
SASRNQGACAEGFAVPSALHVWHRRVCAVPDEMTEQRYCVDYAKRGTAGCKKCKEKILKG
MVRIGKVVPNPFTESGGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDPEKD
MINQHISEATSKAANTPKKKATIQAKLSPSGQITSPKKELLATPNPSPKKFSGFTAKPGN
SDEAPESSSHKSSLSAKKCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLQKGTA
GDGFHGDLYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCSQEEMVRDLEQGDVSETVR
IFFEESKSCPPAAKSLLTIQEVNEFLTQLSKLSKEDDQQSVLQDIASRCTGNDLKCIIRL
IKHDLKMNAGAKHVLDALDPNAYEAFKASRNLQNVVERVLRNQQEAEKLPGLKRTLSVQA
SLMTPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLP
HKVAHFKDFIPQAFPGGHSMILDAEVLLIDNKAGKPLPFGTLGVHKKAAFQDANVCLFVF
DCIYFNDTSLMDRPLRERRKFLHDNMVEIPNRILFSEMKHVMKGSDLADMINRVIREGLE
GLVLKDVKSTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGC
YDPKSQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSRIPSWLKINKIYYPDFIVPD
PKKAAVWEITGAEFSKAEAHTADGISIRFPRCTRIRDDKDWKTATNLPQLKELYQLSKEK
SDFNITAGRRGSTASSSGENEGNSRSSTPHKXAKTPPSKSPAKAKKPEGSKAVVRSPAKK
AEEKRGEKRKAAELDDNRKKMLLDIFTGVKLYLPPSVEDFSKIRRYFVAYDGDLVQEFDT
ASATHVIGDVDENLGAKRVSPDWIWECIRKRRLVAPC
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgcctgccgttttcaagatcctcttcttacagactgccaggacactcggcagaagggaa
ggactttgcttgccccggagacgggcttttctactgagatttgaaagttgccttctgcat
ctcctggtggccagccgatttacttggttccgattgctggtaagaaataagtctttcctt
tctgccagcagaaaccagggagcttgtgctgaaggcttcgctgttccctcagctttgcat
gtttggcatcgtagggtctgcgcagtccctgatgagatgacggagcagaggtactgcgtg
gactatgccaagcgcggcacagccggctgcaagaagtgtaaggagaagatcttgaagggg
atggtgcgcattgggaaggtggtccccaaccccttcacagagtcgggcggggagatgaag
gagtggtaccatgtgaagtgcatttttgagaagctagagagggctcgggccacaacaaag
aagattgaggacatcacagacttggagggttgggaagagctccaggatccggagaaagat
atgataaaccagcatatctcagaggccacttccaaggctgcgaacacacctaagaaaaag
gcaacaatccaggcgaagctctcccccagtggacagataaccagtcccaagaaggagctg
ctagctacccccaatccatcaccaaagaaattctctggcttcacagctaaaccgggcaat
tctgatgaagcccctgaaagctcttcccataagtctagcctctctgcaaagaagtgtgac
ccaaagcacaaggattgcttgctgcgggaattcagaaagttgtgcgccatggttgcagag
aagcccagctataacgtgaaaacgcagatcattcaggacttcttgcaaaaaggaactgcg
ggagatggctttcatggtgacctctacctgactgttaagctgctattaccaggtgttatt
aaaagtgtttacaacttgaacgacaagcagattgtcaagctattcagcaggattttcaac
tgcagccaggaggagatggtccgagacctggagcagggagatgtttccgaaacggtgcgc
atcttttttgaagagagcaagtcctgccctcctgctgccaaaagtctccttaccatccag
gaagtgaatgagttcctcactcaactttcaaagctttccaaggaggatgaccagcaaagt
gtgctgcaggatatcgctagcaggtgcacggggaatgacctgaaatgcatcatcaggcta
ataaagcatgatctgaaaatgaatgctggtgcaaagcatgtgttggatgctttagatcct
aatgcttatgaggcattcaaagcctcacgcaatctccagaatgtggtggagcgagtgctg
aggaaccagcaggaggctgagaagttgccaggtctgaagcgaaccctcagcgttcaggcc
tcactgatgacccctgttcagcccatgctggctgaagcctgtaagtcaattgaatatgcc
atgaagaagtgccccaatgggatgtatgcagagatcaaatacgatggggagcgagttcag
gtccataagaatggagatcacttcagctacttcagccgaagcctcaaacctgtcctccct
cacaaagtagcccattttaaggacttcatcccccaggctttccctggtggacatagtatg
atcctggatgcggaagttcttctgattgataacaaagcagggaaaccgctacccttcggg
acccttggagtacataagaaagctgctttccaggatgccaatgtctgcttgttcgtgttt
gactgcatctatttcaatgacaccagcctgatggacaggcccctgcgtgagcgtcgaaag
tttctccatgataacatggtggaaatccccaaccggatactcttctctgagatgaagcat
gtcatgaaaggttcagatctggcagatatgatcaatcgagtcatccgtgagggcctggaa
ggactggtactgaaagatgtaaagagtacatatgagcctggtaaacgtcactggctaaaa
gtgaaaaaggactatctgaatgaaggtgccatggctgacacggcagacttggtggttctg
ggagctttctatggacaaggcagtaaaggtggcatgatgtccattttcctcatgggctgc
tatgaccccaagagccagaaatggtgcacggtgacaaagtgcgctggtgggcacgatgat
gccaccctggctcgcctgcagaaggagctggacatggtgaagatcagcaaggatcccagt
agaattccaagctggctgaaaattaacaagatctattatccagacttcattgttccagac
ccaaagaaagccgcggtgtgggagatcacaggtgctgagttctctaaagctgaagcccac
actgcagatgggatctccatccgcttccctcgctgcacccggatccgagatgacaaagac
tggaagacggccaccaacctccctcagctcaaggagctataccagctctccaaggagaag
tcagatttcaatatcacagcagggaggagggggtccacagccagcagcagtggtgagaat
gagggaaattctaggtcttccacaccccacaaanttgctaagacacccccaagcaagtca
cctgcaaaagccaagaagccagaaggcagcaaagcggttgttagatctcctgcaaagaag
gcagaggagaagcgaggggagaaacggaaagcagctgagctggatgacaacagaaagaag
atgctgctggacatatttacaggggtgaagctgtacctaccaccgtccgtggaggacttc
agcaaaatccgccggtactttgtggcgtatgatggagaccttgtgcaagagttcgacact
gcctcagcaacacatgtaataggggatgttgatgagaaccttggagccaagcgcgtctct
cctgactggatctgggagtgtatccggaaacggaggctagtggccccttgttaa
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