KEGG   Dermochelys coriacea (leatherback sea turtle): 119845334
Entry
119845334         CDS       T09064                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
dcc  Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119845334 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dcc03041]
    119845334 (SNRNP40)
Spliceosome [BR:dcc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    119845334 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    119845334 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 EIF3I WDR55 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_EIPR1 WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 WDR54 WD_LRWD1 WD40_like PROPPIN
Other DBs
NCBI-GeneID: 119845334
NCBI-ProteinID: XP_038233429
LinkDB
Position
19:complement(15928476..15944221)
AA seq 357 aa
MIEQQKRKGPGPELALVAAAAKRPRHELLLGPGPGGGQPPPGALLQAGPPRCSSLQAPIM
LLSGHEGEVYCCKFHPNGATLASAGFDRLILLWHVYGDCDNFATLKGHSGAVMELHYNTD
GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD
IRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTG
LSLSSEGSYLLSNAMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKI
AGGSADRFVYVWDTTSRRILYKLPGHAGSVNEVAFHPEEPIILSASSDKRLYMGEIQ
NT seq 1074 nt   +upstreamnt  +downstreamnt
atgatcgagcagcagaagcgcaagggcccgggcccggagctggcgttggtggcggcagcg
gccaagcggccccggcatgagctgctgctggggcccggcccgggcggggggcagccgcct
ccgggggccctgctgcaggcgggccctccacgatgttcctccctccaggcacccataatg
ttgctctcaggacatgaaggagaagtttactgttgcaagtttcaccctaatggagccact
ttagcatctgcaggatttgacagactgattttgctgtggcacgtgtatggggattgtgat
aattttgctaccctgaagggacacagtggagcagttatggagttgcactataacactgat
ggcagcatgctcttctcagcatccacagataaaacagtagctgtgtgggatagtgagact
ggagaaagagtgaaaaggctgaaggggcacacatcatttgttaactcctgttatccagcg
aggcggggaccccagctcgtctgtacaggcagcgatgatggaacagtaaagctatgggat
attcgtaaaaaagctgctgtccagacatttcagaacacttaccaggtattagccgtgacc
ttcaatgacaccagtgatcagattatatcaggaggcatagacaatgatatcaaggtatgg
gaccttcgccagaacaaactaacgtacacaatgagagggcatgccgactcagtgactggc
ctcagtttgagttcagaaggctcttacttgctttccaacgcaatggacaacacagttcgt
atctgggatgtgcgaccgtttgcccctaaagagagatgtgtgaagatattccaggggaat
gtgcataattttgagaagaatcttctgagatgctcatggtcaccagatgggagtaaaata
gccggcggatcagcagacaggtttgtttatgtgtgggatacaacctccaggagaattctc
tacaagctgccaggccatgctggctcagtaaatgaggttgctttccatccagaggaacca
attatactctctgcatctagtgacaaaagactgtatatgggagagatccagtga

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