Dermochelys coriacea (leatherback sea turtle): 119845619
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Entry
119845619 CDS
T09064
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc04510
Focal adhesion
dcc04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119845619 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119845619 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dcc00536
]
119845619 (COL2A1)
Glycosaminoglycan binding proteins [BR:
dcc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119845619 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
119845619
NCBI-ProteinID:
XP_038234016
LinkDB
All DBs
Position
20:5937458..6001202
Genome browser
AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVVLLAATHVILLAIVRCQDEDIQEAGSCVQDGQRYSDKDVWKPEPCRICVC
DTGTILCDEIICEEMRDCPSPEIPFGECCPICPTDQPAVSGQPGPKGQKGEPGDIKDVVG
PRGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGLPGPPGPPGLGG
NFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGTSG
PMGPRGPPGPPGKPGDDGESGKPGKSGERGSPGPQGARGFPGTPGLPGVKGHRGYPGLDG
SKGEAGAAGAKGEAGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG
PVGPSGAPGFPGGPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGDPGIAGFKGEQGPKGESGPAG
PQGAPGPAGEEGKRGGRGEPGAAGPVGAPGERGSPGNRGFPGQDGLAGPKGAPGERGPAG
LGGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEAGKAGEKGLPGAPGLRGLPGKDGETGASGPPGPSGPAGERGEQG
SPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGTPGLVGPRGERGFPGERGSPGSQGLQG
PRGLPGTPGTDGPKGATGPSGPTGAQGPPGLQGMPGERGAAGISGPKGDRGDVGEKGPEG
APGKDGGRGLTGPIGPPGPSGPNGEKGELGPPGPSGAAGARGAPGDRGEPGAPGPAGFAG
PPGADGQPGAKGEQGESGQKGDAGAPGPQGSSGAPGPQGPTGVTGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPAGPPGASGKDGPKGARGDGGPPGRAGDPGLQGIAGPPGEKG
ESGEDGPPGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGAGDRG
PPGPVGPPGLTGPSGEPGREGTPGSDGPPGRDGAAGVKGDRGETGAVGSPGAPGPPGSSG
PVGPTGKQGDRGESGAQGPMGPSGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFTG
LQGLPGPPGTPGDQGATGPSGPSGPRGPPGPVGPSGKDGSSGMPGPIGPPGPRGRSGETG
PAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQVEKGPDPMRYMRADQASSDLRQHDVEVDA
TLKSLNNQIESIRSPEGSKKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNM
ETGETCVYPNPSSIPKKNWWTSKTKERKHIWFGETINGGFHFSYGDDNLAPNTANIQMTF
LRLLSTEGSQNITYHCKNSVAYMDEASGNLKKAILIQGSNDVEIRAEGNSRFTYSALADG
CTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGADQEFGVDVGPVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactgtagtgctgctcgcagccacccacgtcatttta
ctagccattgtcagatgccaggatgaggatatccaggaggcaggcagctgtgtgcaggat
gggcagaggtatagtgataaggatgtgtggaaacccgagccctgccggatctgtgtctgt
gacactgggactatcctctgcgacgagataatctgcgaagaaatgagagactgtcccagc
cccgagatccccttcggagaatgctgccctatctgcccaactgaccaacctgctgtcagc
gggcaacctggccccaagggacaaaaaggggaacctggtgatattaaagatgtcgtagga
ccaagaggaccacctggaccacagggacctgcaggggaacaaggaccaaggggtgaccgt
ggggacaaaggcgaaaaaggtgctcctggccctcggggtagagatggcgaacctggtacc
cctggaaaccccggacccccagggctcccgggtcccccagggccccctgggcttggcgga
aactttgctgctcagatggcgggaggattcgatgagaaggctggtggcgctcagttgggt
gtgatgcagggacctatgggacctatgggaccgcgaggacctccaggaccatcgggcgct
cctggccctcaaggatttcaaggcaaccctggagagcctggggaacctggaacttcgggt
ccaatgggtccccgagggcctcccggaccacctggaaaacctggtgatgatggcgaatca
ggcaaacccggcaaatctggtgaacgcggatcccctggccctcagggggctcgaggcttt
ccaggaaccccaggtctcccaggagtcaaaggtcacagaggttaccctgggttagacggc
tccaaaggagaagcaggagctgcaggtgctaagggcgaagctggatcacctggtgagaat
ggttctcctggtcccatggggccccgtggtctcccaggcgaaagaggacgtcccggccca
tctggtgctgctggtgctcgtggcaatgatggtctccctggcccagctggcccccctgga
cccgtcggcccctccggagctcctgggttccccggcggcccaggctctaagggggaagct
ggccccactggtgctcgtggccctgagggtgctcaaggccccagaggtgaatctggtact
cccggctcccctggaccttcaggagcatctggtaaccccggaactgacggcatccctggc
gctaaaggatcagctggcgctcctggaattgccggtgcccccgggttccctgggccacgt
gggcctcccggacctcaaggtgcaactggacctctgggtcccaaaggtcagacgggagac
cccggcattgcaggcttcaaaggtgaacaaggtcccaaaggtgaatcgggccccgcaggg
ccacagggagcacccggcccggctggcgaagaaggcaagagaggtggccgtggtgagccc
ggtgctgctgggcctgtcggagcccccggagagagaggctctcctggaaaccgtggcttc
ccaggtcaggatggtctcgctgggcccaagggtgcccctggcgaacgtggtcccgctggc
cttggggggcctaaaggagccactggtgatcctggacgtcccggagaacccggcttgcct
ggcgcgaggggtctcactgggcgccctggtgatgctggtcctcaaggcaaagtcggtcct
tctggtgcccctggtgaggacggtcgccctggcccgccaggtccacaaggtgctcgcggg
cagcctggcgtcatgggtttcccagggccaaaaggtgctaatggcgaggctggtaaagct
ggagagaagggattgcccggcgctcctggtctgagaggtcttcctggcaaagatggtgag
acaggagcttctggcccccccggaccttccggacctgctggagagaggggtgagcagggc
tcgccaggtccttctggcttccagggactccccggccccccaggtcctccaggcgaaggt
ggcaagccaggagatcagggcgtccccggagaagctggcaccccaggcctcgtgggtccc
cgaggtgaacgtggcttcccaggtgaacgtggctctccaggttcacaaggtctgcagggc
cctcgagggctccctggaactcctggtaccgatggacccaagggtgcgactggtccatct
ggccctactggtgcccaaggtccccctggtctgcaagggatgcccggtgagaggggagca
gctggtatttctggaccaaagggagacaggggtgatgtcggcgagaaaggcccagaagga
gctcccggcaaggacggcggaagaggtttgacaggtccgatcggtccccctggcccttct
ggtcccaacggcgagaagggtgaattgggtcccccaggcccatctggtgctgccggcgct
cgtggcgccccgggtgatcgtggtgagcctggagcccctggccctgctggatttgctgga
cctcccggcgctgatggccaacccggcgctaaaggtgaacaaggagaatctggccagaag
ggagacgctggggccccgggtccacagggttcttccggtgctcctggtccacagggtccc
actggtgtgactggtccgaagggagctcgaggtgcgcagggaccccctggagccaccgga
ttccccggcgctgcaggacgtgtcggccctcccggccctaatggtaacccaggccccgct
ggcccaccaggtgcttctggcaaagatggtcccaagggcgctcgtggtgatgggggccca
ccgggccgtgctggtgaccctggtctccaaggcattgccggtcctcctggtgagaaggga
gagtccggggaagatggcccacctggagccgatgggccacccggtcctcaaggtttggca
ggccagcgaggtattgtcggtcttcccggccagcgtggtgagagaggtttcccagggctg
ccgggtccctccggtgagcctggcaaacaaggagcccctggaggtgccggcgaccgtggg
ccacctggtcctgtgggccccccaggtctgactggtccctctggtgaacctgggcgtgag
ggcacccccggatctgatggcccccctggcagagatggagcagctggagtgaagggtgat
cgcggtgagactggtgctgtcggttctcctggtgctcctggccctcctggctcttcgggt
ccggttggtccaactggcaaacagggagaccgaggagaatctggcgctcaaggccccatg
ggtccctccggacccgcaggcgcacgtggcatgccaggtcctcaaggtcctcgtggtgac
aagggcgaagctggagaggctggtgagagaggtctgaagggtcaccgaggattcactggt
ctgcagggtcttcctggacctcccggtacacctggagatcaaggtgctactggtccttct
ggtccttctggtcccaggggtcccccaggccctgttggtccctctggcaaagatggttca
agtggcatgcccggtccaattggtcctccaggtcctcgtggtcgtagtggcgaaaccgga
cctgctggtccccctggaaatcctggcccccctggacctcctggccccccaggccccggc
attgacatgtcagccttcgccggtttgggccaggttgagaaaggccctgaccctatgcgc
tacatgcgagctgaccaggcctctagcgacctgcgccagcatgatgttgaggtcgacgcc
actctgaaatccctcaacaaccagatcgaaagcatccgcagccccgagggctccaagaag
aacccagcccggacctgccgtgaccttaaactctgccaccccgagtggaagagcggtgac
tactggattgaccctaaccagggctgtaccttggatgccattaaggttttttgtaacatg
gagactggcgagacatgcgtctatcccaacccctccagcattcccaagaagaactggtgg
accagcaagaccaaggagaggaagcatatctggtttggagagaccatcaatggtggattc
cactttagctatggagatgacaacctggcccctaacactgccaacatccagatgaccttc
ctgcgtctcctgtccaccgaaggctcccagaacataacctatcactgcaagaacagcgtt
gcctacatggatgaggcttccggcaacctgaagaaagccatcctgatacagggatccaat
gacgtcgagatcagagctgagggcaacagcagattcacatacagtgccttggcggatggc
tgcacgaaacacactggcaaatggggcaagacagtcattgaataccgatcacagaagacc
tcgcgcctgcccatcatcgatattgcccctatggacattggtggggccgatcaggagttt
ggcgttgacgttgggccagtctgctttttgtaa
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