Dermochelys coriacea (leatherback sea turtle): 119845800
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Entry
119845800 CDS
T09064
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X4
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119845800 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcc03019
]
119845800 (XAB2)
03041 Spliceosome [BR:
dcc03041
]
119845800 (XAB2)
Messenger RNA biogenesis [BR:
dcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119845800 (XAB2)
Spliceosome [BR:
dcc03041
]
Complex B
Other components
Prp19-related factors
119845800 (XAB2)
Complex C
119845800 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_12
TPR_8
TPR_19
TPR_15
ARM_TT21
SNAP
NRDE-2
ARM_TT21_C
TPR_16
LTN1_E3_ligase_6th
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
119845800
NCBI-ProteinID:
XP_038234535
LinkDB
All DBs
Position
20:complement(12314227..12331257)
Genome browser
AA seq
740 aa
AA seq
DB search
MQEEEDLQYEEEILRNPFSVKCWIRYIEFKQNAPRHVLNLIYERALKELPGSYKLWYNYL
KQRRKQVKNRCVTDPGYEEVNNCHERALVFMHKMPRIWLDYCQFLMDQCRITRTRRTFDR
ALRALPITQHHRIWPLYLKFVRLYPLPETAVRVYRRYLKLSPENAEEYIEYLRSIDRLDE
AALRLATVVNDERFVSKEGKSNYQLWHELCDLISQNPDKVKSLNVGAIIRGGLTRFTDQL
GKLWCSLADYYIRSGHFEKIINTYTEAVQTVDPFKATGKTHTLWVSFAKFYEDNGQIEDA
RTIFEKATKVNFKQVDDLACVWCEYGEMELRHENYDQALRILRKATAIPAKKAEYFDTSE
PVQNRVYKSLKVWSMLADLEESLGTFKSTKAVYDRILDLRIATPQIIINYALFLEEHTYF
EESFKAYERGISLFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPQKYAKT
IYLLYAKLEEEFGLARHAMAVYERATRAVQPSEQYEMYNIYIKRAAEIYGVTHTRSIYEK
AIEVLSDEHAREMCQRFADMECKLGEIDRARAIYSYCSQICDPRTTGSFWQTWKDFEIRH
GNEDTIREMLRIKRSVQATYNTQVNFMASQMLKVSSNATGTVSDLAPGQSGMDDMKLLEQ
RAEQLAAETERDKPRSKEKILFVRSDVSRSEMAALSRQVNPDEIDIDEDEGDESEENEPD
EVQLEQQSVPSAVFGGLKVD
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaggaggaggatctgcagtacgaggaagaaatcctgcgcaaccccttctctgtc
aagtgctggatccgctacattgagttcaagcagaacgcccctcggcatgtgctgaacctg
atctacgagagagccctcaaggagctgccaggcagttacaagctgtggtacaactacctt
aagcagcgccggaagcaggtgaagaacaggtgtgtgactgaccccggctatgaggaggtg
aacaactgccatgaacgtgccctcgtcttcatgcacaagatgcctcggatctggctagat
tactgccagttcctcatggatcagtgccggatcacccgcacacgcaggacctttgaccgg
gcactccgggcactgcccatcacgcagcaccatcgaatctggcccctctacctgaagttt
gtgcgcttgtatcccctgcccgagacggctgtgcgagtctaccgcaggtacctgaagctg
agccctgagaacgctgaagagtacatcgaatatctgcgctccatcgaccggctggacgag
gccgccctccgccttgccactgtggtcaatgacgagaggttcgtctccaaggaggggaaa
tccaactaccagctgtggcacgagctttgtgacctcatctcccagaaccctgacaaggtg
aagtccctcaatgttggggccatcattcgcggaggcctcacccgcttcaccgaccagctg
ggcaagctctggtgctccctggccgactactacatccgcagtgggcactttgagaagatc
atcaacacctacacggaggccgtgcagaccgtggaccccttcaaggccaccggcaagacg
cacacactctgggtctcctttgccaagttctacgaggacaatgggcagatcgaggatgcc
aggaccatctttgagaaggccaccaaggtgaacttcaagcaggtggacgacctagcctgc
gtttggtgcgagtatggggagatggagctgcgccatgagaattatgaccaggccctgcgc
atcctccggaaagccacggccatcccagccaagaaagcagagtacttcgacacctcagag
cctgtccagaaccgtgtgtacaaatccctcaaagtctggtccatgctggctgacctggaa
gagagcctgggcaccttcaagtccaccaaggcggtgtatgaccgcatcctggacctgcgc
attgccacgccccagatcatcatcaactacgccctcttcctggaggagcacacctacttc
gaggagagcttcaaggcctacgagaggggcatctccctgttccgctggcccaatgtgtac
gacatctggaacacctacctgaccaagttcatcgaccgttatggcggcaagaagctggag
cgtgcccgcgacctcttcgagcaggcactggacggctgcccccagaaatacgccaagacc
atctacctgttgtatgccaagctggaggaggagttcgggctggcgcggcatgccatggca
gtgtacgagcgggccacacgggccgtacagccctcggagcagtacgagatgtacaacatc
tacatcaagcgggcggccgagatctatggggtcacccacacccgcagcatctatgagaag
gccattgaggtgctgtcagacgagcatgcccgcgagatgtgccagcgctttgccgacatg
gagtgcaagctgggcgagatcgaccgggcccgggccatctactcctactgctcacagatc
tgtgacccccggaccacaggctccttctggcagacatggaaggactttgagatccggcac
gggaacgaagacaccatccgggagatgctgcgcatcaaacgcagcgtccaagccacctac
aacacccaggtcaacttcatggcctcacagatgctcaaagtctccagtaatgccacaggc
accgtgtcagacctggcgccgggccagagtggcatggacgacatgaagctgctggagcag
cgggcggagcagctggccgccgagacagagcgggacaagccccggtcgaaggagaagatc
ctctttgtcaggagcgatgtgtcacgcagtgagatggccgcactctccaggcaggtgaac
cctgatgagatcgacattgatgaggatgagggggatgagagcgaggagaatgagcctgat
gaggtgcagctggagcagcagagcgtcccctccgctgtgttcggggggctgaaggtcgac
tga
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