Dermochelys coriacea (leatherback sea turtle): 119846251
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Entry
119846251 CDS
T09064
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dcc03016
]
119846251 (RTCB)
Enzymes [BR:
dcc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
119846251 (RTCB)
Transfer RNA biogenesis [BR:
dcc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
119846251 (RTCB)
Prokaryotic type
tRNA splicing ligases
119846251 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
119846251
NCBI-ProteinID:
XP_038235580
LinkDB
All DBs
Position
1:complement(255278920..255297274)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLDKNSWRIKKGFVPNMNVEGVFYVNEPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKEQTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTERGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagttgcagtatctggacaagctcgacaagaacagctgg
aggatcaagaagggcttcgtgcccaacatgaatgtggaaggagtgttttatgtaaatgag
ccgctagagaaattaatgtttgaggagttacgaaatgcctgcagaggtggcggtgctggt
ggattcttgcctgccatgaaacagattgggaatgtggctgcactacctggcattattcat
agatctattgggcttcctgacgtgcattctggctatgggtttgccattggtaacatggca
gcatttgacatgagtgacccagaggcagtggtgtcaccaggtggtgtcgggtttgacatc
aactgtggtgtccgattgctgcgtactaacctggatgaaagtgacgtccagccggtgaag
gaacagctcgcccaggccatgtttgaccatattccagttggggtgggctccaagggtgtc
atccccatgaacgccaaggacttggaggaggccctggagatgggtgtggactggtctctc
cgggaaggctatgcctgggcagaggacaaggagcactgtgaggagtatggaaggatgctg
caggctgatcccaataaggtctcctcaagagctaagaaaagaggtttgcctcagctgggg
accctgggagcaggaaaccattatgctgagatccaggtggtggatgacatttataatgag
tatgctgccaggaagatgggcattgatcacaagggacaggtgtgtgtaatgatccacagc
ggcagcagaggcctgggccatcaagtagctacagatgctttagtggctatggagaaagcc
atgaaacgggacaagatcatagttaatgatcgccagttggcatgcgccagaattgcctcc
ccagagggacaggactacctaaagggaatggcagcggctgggaactatgcatgggtcaac
cgctcttccatgactttcctaaccagacaggcctttgctaaagtcttcaacacaacccct
gatgacctagatcttcatgtgatctatgatgtgtctcataacatcgccaaagtggagcag
catgtggtggatggaaaagagcagaccctgttggtgcacagaaagggatcaaccagggct
ttccctcctcatcatcctctcattgctgtcgattaccaactgactggacagccagtactg
attggtggaacaatgggaacctgcagctatgttcttactggtactgaacgaggcatgacc
gagacctttggaaccacatgccatggagctggtcgtgcattgtcccgagccaaatctcga
cgaaacttggacttccaggatgtgttggacaagctggctgacatggggatcgccatccgc
gttgcttcccccaagctagtcatggaagaagcaccagaatcctataagaatgtgacagat
gtggttaacacctgccatgctgctggcatcagcaagaaagctattaaattgagacctatc
gctgttattaaaggctag
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