Dermochelys coriacea (leatherback sea turtle): 119846871
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Entry
119846871 CDS
T09064
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc03030
DNA replication
dcc03410
Base excision repair
dcc03420
Nucleotide excision repair
dcc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119846871 (LIG1)
03410 Base excision repair
119846871 (LIG1)
03420 Nucleotide excision repair
119846871 (LIG1)
03430 Mismatch repair
119846871 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dcc03032
]
119846871 (LIG1)
03400 DNA repair and recombination proteins [BR:
dcc03400
]
119846871 (LIG1)
Enzymes [BR:
dcc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119846871 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
119846871 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
119846871 (LIG1)
DNA replication proteins [BR:
dcc03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
119846871 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
119846871 (LIG1)
DNA repair and recombination proteins [BR:
dcc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
119846871 (LIG1)
NER (nucleotide excision repair)
Other NER factors
119846871 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
119846871 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
119846871
NCBI-ProteinID:
XP_038237005
LinkDB
All DBs
Position
23:7409139..7436622
Genome browser
AA seq
953 aa
AA seq
DB search
MMQRPITSFFQPMKAVKEEEKIRLPAEEDSANQVLEAAVMQRNGLSLCVDSPVKSAAKRP
LRRVLESDSDEEEAVLTAQAEVDPIQEKNSEKASSKEEPMQTPQSDLSADSPSPSSSHSA
GDSPALSDSPAVGRAGIPRRRTARKQIPKRKIELPTSREKNRDEEPSAKRCREEQGPGDE
VGRGAKEEVAMEMQEVKGQHSEIELAEVNGTLEEGAVNKGEEDYAKGGAREKPVPPKPSR
AISSFFAPKKVPVARAGKADELAAVEIPPAPTGSATASSNGSDGTAGSFSKPVVPLDPVE
YNPSKSSYHPIQDACWGHGQRVPYLAVARTFERIEEVSARLKNIETLSNLFRSVIALSPS
DILPCIYLCLNRLGPAYKGLELGIGETILMKAVAQATGRQLDQIKAEAQEKGDLGLVAES
SRSNQRTMFTPPKLSAAGVFSKLQEIARMTGSASMNKKIDIIKGLFVACRHSEARYITRS
LGGKLRIGLAEQSALSAIAHAVSLTPPGQGFPPEVLDAGQGKSAEARKAWLEEQTQILKQ
TFCELPSYDIIVPILLEHGVESLPQHCKITPGIPLKPMLAQPTKGIGEVLKRFEEAAFTC
EYKYDGERAQIHILENGDVHIYSRNQEDNTSKYPDIISRIPKVKKGSVRSCILDAEAVAW
DPEKRQIQPFQVLTTRKRKDVEAAEIKVQVCLYAFDILYLNGESLVKEPFSRRRLLLHNS
FVETEGEFLFATSMDASSLDEISEFLDQSIKDSCEGLMVKSLEVDATYEIAKRSHKWLKL
KKDYLEGVGDTLDLVVIGAYLGKGKRVGMYGGFLLACYDEESEEYQSICKIGTGFTEEIL
EKHYSFLKDHVLEKPRPYYRWDSSTEPNHWLAAVQVWEVKCADLSISPVHKAAIGLVDEE
KGISLRFPRFLRVRDDKKPEEATTSSQVAELYKQQQQIQNQQPAEKVEEEDFY
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagcgccccatcacgtcatttttccagcccatgaaggcagtgaaggaggaggag
aagatcagactgcctgcagaagaggactcagccaaccaggtgttggaggcggctgtgatg
cagagaaatggcctaagcctctgtgtggactccccagtgaaatccgctgccaagaggccc
ctgcgccgagtcttggagagcgacagtgacgaggaggaggctgtgctgacagcccaagca
gaggtggatcccatacaggaaaaaaactcggagaaagccagcagcaaggaggagcctatg
caaactcctcagtctgatctctctgcggatagcccctcgccaagcagcagtcactctgct
ggagacagcccggccctttctgactcccctgccgtcggccgtgctggcatccccagacgc
aggacggctcgcaagcagatccccaaacgcaaaatagagctgccaactagcagggagaag
aacagggatgaggagccaagtgccaagagatgccgggaagagcaaggcccaggagatgag
gtaggcaggggagcaaaggaagaagtagccatggaaatgcaagaggtgaaaggtcagcat
tcggagatagaactggctgaagttaatggcactttggaggagggggctgtgaacaaggga
gaagaggactatgctaaagggggagcccgggagaagcctgtgccacccaagcccagcaga
gccatctccagcttctttgcccccaagaaggtgccagtggcaagggcagggaaagcagat
gaacttgcagcagtggagataccacctgccccaactggctcagccactgcgagcagcaat
gggagtgatggcacagctggcagtttctccaagccagttgtgccactggaccctgtggag
tacaatccttcgaagagcagctaccaccccatccaggacgcctgctgggggcatggtcag
agggtcccctacctggctgtggctcggacctttgagcggatcgaggaggtgtctgcccgg
ctgaagaacattgagaccctgagcaacctcttccgctcggtgatcgccctgtcgccatcc
gacattctgccctgcatctacctctgtctgaaccgcctgggccctgcctacaaggggctg
gagctgggcattggcgagaccatcctcatgaaggctgtcgcacaggcaacgggccgccag
ctggatcagatcaaagccgaggcccaggagaagggggatctgggcttggtagcagagagc
agccgcagcaaccagcgcaccatgtttacgccgcccaagctgagtgctgctggggttttc
agcaagctacaggagattgccaggatgacaggcagtgcttccatgaacaagaaaatcgac
atcatcaaagggctgtttgtggcctgccggcactcggaagctcgctacatcactcggtcc
ctgggcgggaagcttcggattgggctggcagagcagtcagcgctgtcagccattgcccat
gccgtgtctcttactcccccgggacaagggtttccccctgaggtactggatgctggccag
ggcaaatctgcagaggcacgcaaagcctggctggaggagcagacccagatcctcaagcag
accttctgtgagttgcctagctatgacatcatagtgcccatcctgctggagcatggagtg
gagagcctgccacagcactgcaagatcaccccagggatcccgctgaagcccatgctggcc
cagcccaccaagggcattggggaggtgctgaagcgctttgaggaggctgccttcacctgc
gagtacaagtatgacggggagcgagcccagatccacatcctggagaatggggatgtgcac
atctacagccgcaaccaggaggacaacacctccaaataccctgacatcatcagccgcatc
cccaaggtgaagaagggcagtgtgcggtcttgtatcctggatgctgaggccgttgcctgg
gaccctgagaagaggcagattcaacccttccaggtcctgaccacgcggaagcgcaaggat
gtggaagctgctgagatcaaagtgcaggtgtgtctgtatgccttcgacattctgtacctc
aatggggagtccctagtgaaggagccattctccaggcgccgtctgctgctgcacaattct
tttgtggagacggagggggagttcctgtttgccacctccatggacgcctccagcctggac
gagatctctgaatttcttgaccagtccatcaaagactcctgcgagggcctcatggtcaag
tccctggaggtggacgccacgtacgagatcgccaagagatcccacaagtggctgaagctg
aagaaggattacctggaaggtgttggtgacactctggacttggtggtgattggtgcctac
ctgggcaagggcaagcgagtaggcatgtatggcggcttcctgctggcctgctatgatgag
gagagtgaggagtaccagagcatctgcaagattgggactggcttcacagaggagatcctg
gagaagcattacagcttcctgaaggaccatgtgctagagaagccacggccctattaccgc
tgggatagcagcactgagcccaaccactggctggcagctgtgcaggtgtgggaagtgaag
tgcgctgacctgtccatctcgcctgtgcacaaggcagctataggtctggtggatgaggag
aagggcatctccctgcgctttccccggttcctgcgtgtgcgtgatgacaagaagcctgaa
gaagccacaaccagttcccaggtggctgagctctacaagcagcagcagcagattcagaac
cagcagcctgcagagaaggttgaagaggaggatttctactag
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