Dermochelys coriacea (leatherback sea turtle): 119848597
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Entry
119848597 CDS
T09064
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119848597 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcc03041
]
119848597 (SNRNP200)
Enzymes [BR:
dcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119848597 (SNRNP200)
Spliceosome [BR:
dcc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
119848597 (SNRNP200)
Complex C
U5 SnRNP specific factors
119848597 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Terminase_6N
Hikeshi-like_C
Motif
Other DBs
NCBI-GeneID:
119848597
NCBI-ProteinID:
XP_038240507
LinkDB
All DBs
Position
26:complement(14472602..14513385)
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVRDEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKRDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMESDPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFAQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLVSVDKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGINVAELTGDHQLCKEEINATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYED
VATFLRVDPVKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEVVLGNVQNAKDAVNWLGYAYLYIRMLRSPSLYGLSHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNETVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVFLDWYEKFQERLSKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNVNLFIVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAIMKHSPKKPVI
VFVPSRKQTRLTAIDILTTCASDVQRQRFLHCTEKDLGPYLDKLSDGTLKETLLNGVGYL
HEGLTAMERRVVEQLFGSGAVQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEDRNGLLQLSDAQITDVARFCNRYPNIELSYEVVEKECIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAESDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgactgcgcggagcctgcagtacgagtacaaggcgaattctaacctcgta
cttcaagctgatcgctccttgatcgacaggacccgcagagatgagcctacgggggaggtg
ctctccttggttgggaagctggagggcactcgtatgggtgataaggctcaaagaaccaaa
ccccagatgcaggaagagagacgagcgaagaggaggaagcgtgatgaggacaggcatgat
atcaacaaaatgaagggttatacgctgctctctgagggcattgatgagatggtgggaatc
atctacaaacccaaaaccaaggagacccgggagacctatgaggtgctgctaagtttcatt
caggcagcacttggggaccagccacgtgacattctctgtggagcagctgatgaggtcttg
gctgtattgaagaacgagaagctgcgagacaaagagaggcggaaggaaattgatttgctg
ttaggacagacagatgacacccgctaccatgtgctggtgaacttgggcaagaagatcaca
gactatggtggtgacaaggagatccagaacatggatgataatattgatgagacgtacggc
gtgaatgtgcagtttgagtctgatgaagaggaaggtgatgaggacgtgtatggtgaagta
cgggatgaggcgtctgatgatgacatggaaggggacgaggccgttgtccgctgcaccctc
tcagccaatctggtggcgtcaggtgagctgatgagctccaagaagcgagacttgcatccc
cgagacattgatgccttttggcttcagcggcagctgagtcgcttctacgatgatgccatt
gtgtcccagaagaaagcagatgaggtgctagagatcttaaagactgccagcgatgacagg
gagtgtgaaaaccagcttgtcctgctcctgggctttaacacctttgacttcattaaggtg
ctgaggcagcaccgaatgatgatcctgtactgtacgctgctggctagtgcacaaagtgaa
gccgagaaggagaggatcatggggaagatggaatctgatcccgagctgtcaaaatttctg
tatcagctgcatgagacggagaaggaagatctgattcgggaggaacgctctcgcagagaa
cgtgtgcgccagtcccggatggacacagacctggaaaccatggatctggatcagggtgga
gaggcgctggccccacgccaggtattggacctggaagatctggtgtttgcccagggcagc
catttcatggccaacaagcgttgccagctgcctgatggctcgttccgcaggcagcgcaaa
ggctacgaggaggtgcatgtgcctgccctgaagccaaagccctttggctccgaagagcaa
ctggtttctgtggacaaactgcccaaatatgcccaagctgggtttgaggggttcaaaaca
ctgaaccggattcagagcaaactctaccgtgctgcgcttgaaactgatgagaacctgcta
ctctgtgctcccacgggtgcggggaagaccaatgtcgctctgatgtgcatgctacgcgag
atcgggaagcacatcaacatggatggaaccatcaacgtggatgacttcaaaatcatctac
attgcacctatgaggtctctggtgcaggagatggtgggcagctttgggaagcgcctggcc
acttatggcatcaatgtggccgagctgactggagaccatcagttgtgtaaggaagaaatc
aatgctacccagatcatcgtctgcacccctgagaagtgggacatcatcacccgcaaggga
ggggagcgcacctatacccagctagtgcgcctcattatcctggatgagatccacctactg
catgacgaccggggccctgtcctggagtccttggtcgctagagccatccgcaacattgag
atgacccaggaggatgtgaggcttgttggcctgagtgcaactctcccaaactatgaagat
gtagctacgttcctgagagtggaccctgtcaaaggcttattctactttgataacagcttt
cgcccagtgcccctggagcagacctatgtgggaatcacagagaagaaagcaatcaagcgc
ttccagatcatgaatgagattgtctacgagaagattatggagcatgctgggaagaatcag
gtgctggtgttcgttcactccaggaaggagacagggaagacagcccgagccatcagggac
atgtgtctggagaaagatacgctgggcctcttccttcgtgagggctcagcctctacagag
gtcctgaggacagaagctgagcagtgcaagaatctagagctgaaggacctattgccatac
ggctttgctattcaccatgctgggatgaccagagtagatcgaacactggtggaggacctg
tttgctgacaagcacattcaggttctggtctccactgcaacgctggcctggggcgtgaac
cttcctgctcacacggtcatcatcaaagggacacaggtgtacagcccggagaagggccgc
tggacggagctgggtgctctggacatcctgcagatgcttggccgtgctgggagaccccag
tacgacacaaagggtgaggggatcctcatcacctcgcacggagagctgcagtattacctc
tccctactcaaccagcagctccctatcgagagtcagatggtgtcgaaactgccagatatg
ctgaatgcagaggtggtgctggggaatgtccagaatgcaaaggatgcagtgaattggctg
ggctacgcctacctgtacatccgaatgctacgctccccgtcgctctatgggctctctcat
gatgacctgaagggagaccccttgctggatcagcgccggctggacttagttcacactgca
gcactgatgctagacaagaacaatcttgtgaagtacgataagaagacggggaacttccag
gtgactgagctgggccgcattgccagccactactacatcaccaacgagaccgtacaaacc
tacaaccagctcctgaagcccaccttgagtgaaatcgagcttttccgggtcttctccctg
tcctctgagttcaagaacatcactgtgcgggaggaagagaagctggagctccagaagctg
ctagagcgggtcccaattccagtgaaggagagcattgaggagcccagtgccaagatcaat
gtgctcctgcaggcctttatctcccagctgaagctggaagggtttgcgctgatggcagac
atggtgtacgtcacacaatctgctgggcggctgatgcgtgcgatctttgagattgtcctg
aaccggggctgggcacagctcactgacaagactctgaacctctgcaagatgattgacaag
cgaatgtggcagtccatgtgccccctgcgccagttcaggaaattgcctgaggaagtggtg
aagaaaatcgagaagaagaacttcccgtttgaacgtctctatgacctgaaccataatgaa
ataggggagctcattcggatgccgaagatgggcaagacgatccacaagtacgttcatctg
ttcccaaagctggagctgtctgtccatctccagcctatcaccaggtccaccctgaaagta
gagctgaccatcaccccggactttcagtgggatgagaaggtgcatggctcgtctgaagcc
ttctggatcctggtggaggatgtggacagtgaagtgattctgcaccatgagtacttcctg
ctgaaagcgaagtatgcccaggacgagcatctcatcaccttcttcgtgcctgtgttcgag
ccgctgccccctcagtacttcatccgggtggtctcagaccgctggctctcctgtgagacg
cagctgcctgtgtccttcaggcacctgattctccccgagaaataccccccgcccacagag
ctcctggacctgcagccactgcctgtgtctgctctgcgtaacagtgcctttgagagcctc
taccaggacaagttccccttcttcaaccccatccagacccaagtgtttaacaccgtctat
aacagcgacgacaatgtgttcgtgggcgcccccacagggagcggaaagaccatctgtgct
gagttcgccatcctaaggatgctgctgcagaactcggaggggcgttgtgtctatatcacc
cccatggaggcccttgctgagcaggtcttcctcgactggtacgagaagttccaggagcgg
ctcagtaagaaagtggtcttgttgacgggggagaccagcacggatctcaagctgctgggc
aagggcaacatcatcatcagcacccccgagaaatgggacatcctgtcccggcgctggaag
cagcgcaagaacgtccagaacgtcaacctcttcattgtggacgaagtgcacctcatcggg
ggcgagaatgggcccgtgctggaggtgatctgttcccggatgcgctacatctcctcccag
atcgagcggcccatccgcatcgtggccctgagctcctcgctgtcaaacgcgaaggatgtc
gctcactggctgggctgcagcgccacgtcgaccttcaacttccaccccaacgtgcgccct
gtgcccctggagctgcacattcagggcttcaacatcagccacacacagacccgcctgctg
tccatggccaagccggtctatcatgccatcatgaagcactcccccaaaaagccggtcatt
gtctttgtcccgtcacgcaagcagacgcgcctcacggccatagacatcctcaccacctgt
gcctccgatgtccagaggcagaggttcctgcactgcacagagaaggacttggggccgtat
ctggacaagctgagcgacggcaccctgaaggagacgctgctcaatggtgttggctacctg
cacgaggggctgacagccatggaacggcgcgtggtggagcagctgtttggctctggcgct
gtccaggtggtggtagcctctcggagcctgtgctggggcatgaacgtagccgctcacctg
gtgatcatcatggacactcagtactataacggcaagatccatgcgtatgtggattacccc
atctacgatgtgctgcagatggtgggccatgccaatcgccccctgcaagatgacgagggg
cgctgcgttattatgtgccagggatccaagaaggatttcttcaagaagttcctgtacgag
ccccttccagtggaatcgcacctggatcactgcatgcatgaccacttcaatgctgagatt
gtcaccaagaccatcgagaataagcaggatgctgtggactacctcacctggaccttcctg
taccgcaggatgacccagaaccccaactactacaatctgcaaggggtgtctcacagacac
ctgtcagaccacctgtccgagctggtggagcagaccctcagtgacctggagcagtccaag
tgcatcagcatcgaggacgagatggacgtggcgcccctcaatctggggatgatcgcagcc
tattactacattaactacaccaccattgagctcttcagcatgtctctgaatgccaagacc
aaggtgcgagggctgattgaaataatttccaacgctgctgagtacgagaacatccccatc
aggcaccacgaggataacctcctgcggcagctggcacagaaagtccctcataaactgaat
aaccccaagttcaacgacccccatgtcaagaccaacctgctgctgcaggcacacctgtcc
cgcatgcagctgagcgccgagctgcagtccgacacggaggagatcctcagcaaggcgatt
cgcctgatccaggcctgcgtggatgtcctgtctagcaacggctggctcagcccggccctg
gcggccatggagctggcccagatggttacccaggccatgtggtcgaaggactcttatctg
aagcagctgccgcacttcacttcggagcacatcaagcgctgtacggacaagggggtggag
agcgtgttcgacatcatggaaatggaggacgaggaccgcaatggcctgctgcagctctcg
gatgcccagatcactgatgtggcccgtttctgcaaccgataccctaacattgagctctcc
tacgaggtggtggagaaggagtgtatccgcagcggagggccagtggtggtgctggtacag
ctggagcgagaggaggaggtcacgggacctgtcattgctcccctcttcccccagaaacgt
gaggagggctggtgggtggtgatcggagactccaaatccaacagcctcatctccatcaag
cggctgactctgcagcagaaggccaaggtgaaactggattttgtggccccagccacaggt
gcccacaactacaccctctacttcatgagtgacgcctacatgggctgtgaccaggagtat
aaattcagcgtggatgtgaaggaggcagagagcgacagcgactctgactga
DBGET
integrated database retrieval system
