Dermochelys coriacea (leatherback sea turtle): 119851760
Help
Entry
119851760 CDS
T09064
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc04382
Cornified envelope formation
dcc04510
Focal adhesion
dcc04512
ECM-receptor interaction
dcc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119851760 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119851760 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119851760 (COL4A2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119851760 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dcc04147
]
119851760 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
dcc00536
]
119851760 (COL4A2)
Exosome [BR:
dcc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119851760 (COL4A2)
Glycosaminoglycan binding proteins [BR:
dcc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119851760 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119851760
NCBI-ProteinID:
XP_038248015
LinkDB
All DBs
Position
1:108245826..108472117
Genome browser
AA seq
1755 aa
AA seq
DB search
MNTHKPGGASEGFSWDRKALLLGAPHSLGDEAKMRSSRFLLSRRALWQAMQVVLLLVLAS
LLTGRVKAGGKSYTGPCGGRDCSRGCECFPEKGGRGQPGLLGPQGFPGPPGLMGIPGLEG
HKGHKGERGQPGVTGPKGEVGLRGVTGFPGADGVPGHPGQPGSRGKPGHDGCNGTRGDAG
EQGSQGPSGQPGFFGIQGPKGQKGEPFVMTPELASKFKGEPGEPGLLGFPGPQGTLGIVG
LIGPTGNPGRPGPPGPPGPPGPPGNRGLGFYGEKGEKGEIGPQGPPGLPSTRELIVSPDT
ILVEQYKGEKGIKGETGEPGTPGLPAYSAEDGEEGIIGFPGLRGLPGINGIPGAAGEKGF
QGFDGMPGSSGPKGMKGEQGERGFQGPPVYTQYPIRRKGIRGDPGLPGVPGPAGDLGDQG
DPGLPGLPGSSDGFPDGSERRGLRGEMGPKGFSGEPGFLATKPGPPGSDGKLGLPGFPGP
PGPPGTPGYPFGLKGRQGDPGEAGSRGFPGFRGQKGIKGETGDCKCIESEEARRGPAGPP
GPPGFPGQTGHPGQKGDNGDQGQHGLPGFSGAKGFPGAVGFPGPKGEKGNSRYITTKGTK
GDPGGPGLSGIKGEDGFPGKDGIDGLPGLPGLPGDGVRGSPGDPGYPGTQGENGFPGEIG
LPGAGLPGPKGYRGPSGDSGTYGNPGLQGPPGPRGAPAQLDCNQVTEDLSRGDGTKTVWS
GAECMRAPKGAPGKPGLPGAIGAKGTKGIPGDPGLDGFQGLKGSQGDPGREGLPGPRGFT
GPRGDGGPPGLPGLQGNPGSAGKPGAPGPAGPKGIAGEVLGAAPGTPGDFGPSGFPGLKG
LQGDHGVPGIRGAGGTPGLSGSKGQKGPPGPLGLPGLPGQPGLHGFPGLPGQQGPPGRTG
SPGFVGSLGARGDQGDQGFPGPVGMKGLAGDKGELGNKGVQGIPGVPGLPGIDGMPGFPG
LKGAKGSPGIGGFKGMLGQKGKPGLKGIKGEVGSFGNLGFKGLQGEPGHKGDRGDQGPAG
KPPKIISSMLFEVKGEKGDVGETGLKGGLGFKGSKGMPGLPGKPGVPGLPGSTSHIEGEK
GDAGIKGVTGVQGYPGTIGPPGIRGFPGTTGIRGEKGIEGIRGDYGRPGSAGQTGDRGDT
INLPGSAGLKGEAGVTGSLGVKGTRGDKGEGGDSGFTGIEGLKGTQGFPGLKGQKGFPGL
VGPPGSQGDPGIPGFQGEKGSRGWPGLAGKAGLPGFRGISGLDGLPGSKGLPGSPGPDAY
GTEGFPGIYGDKGEAGKPSTIEGTRGPPGQKGERGNPGERGPTGDLGSDGIPGFPGVSNI
SGIPGDVGSPGLDGVPGYPGPRGRPGILAPAGSKGEDGQIGVLGEDGQKGTRGDPGPPGR
TGISGYPGPKGHKGAQGLMGTLGLVGAFGDTGPTGPKGDRGPTGFQGPPGSPGLPAVPPK
LVTHQGAAGPRGNIGPQGILGEMGPHGPPGDPGFRGPPGKPGFQGRGGMSALPGFRGDQG
PSGFPGLVGFEGEPGRPGNPGLPGMPGRSVNIGYLLVKHSQSEQEPMCPVGMNKLWSGYS
LLYFEGQEKAHNQDLGLAGSCLAHFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMM
PVAEEEIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPEGWRSLWIGYSFLMHTGAGDEGG
GQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTINQQFQSLPSADTLKAGL
IRTHISRCQVCMKNL
NT seq
5268 nt
NT seq
+upstream
nt +downstream
nt
atgaacactcacaagccaggaggtgcctcggaagggttttcctgggacaggaaagctttg
ctgctgggagccccgcacagcctgggagacgaagcaaagatgagaagctcgcggttcctc
ctctcacgtcgtgccctttggcaggctatgcaggtcgtgctgctcttggtgttggcctca
ctgttaactggcagagtaaaagctggtggaaaatcttacacaggaccatgtggaggaaga
gactgtagtaggggatgtgaatgtttccctgaaaaagggggtcgtggtcaaccaggacta
cttggacctcagggattccctggaccaccaggattaatgggtatcccaggtttagaaggt
cacaaaggtcacaaaggtgaaagagggcaacctggagtaactggaccaaaaggagaagtg
gggctaagaggagtaactggtttccctggtgcagatggtgttcctggtcatcctggtcag
ccaggatcaagggggaaaccaggtcatgatggctgcaatgggacaagaggtgatgctggt
gaacaaggaagtcaggggcccagtggtcaacctggtttctttggaatccaaggaccaaaa
ggtcagaagggggaaccttttgtaatgactcctgaactagcaagcaaattcaagggagag
cctggtgagccaggattgttgggctttccaggacctcaaggtactctcggtattgtgggt
ttaattggtccaacaggaaatccaggaagaccaggaccacccgggccaccgggaccccca
ggaccaccaggcaacaggggccttggtttttatggagaaaaaggtgaaaagggtgaaata
ggtccacagggccctcctgggcttccatctacgagggagctgatagtttccccagacaca
atcctagtagaacaatacaagggtgaaaagggaataaaaggagaaacaggagaacctgga
actccaggtttacctgcatattcagcagaagatggagaagaaggaataataggttttcca
ggactaaggggattacctggtatcaatggcatcccaggagctgctggggaaaaaggtttt
caaggatttgatggcatgcctggcagcagtggccctaaaggaatgaagggagagcagggt
gagagaggttttcaaggaccacctgtttatactcagtatcccattcgaagaaaaggtata
agaggtgatccaggattgccaggtgttcctggacctgcaggagacctgggggaccaagga
gatcctggccttcctggtcttcctggatcgtcagatggctttcctgatggctctgaaaga
agaggtttacgtggggaaatgggtcccaaaggttttagtggagaaccaggttttctagca
acaaagccaggtccacctggtagtgatggtaaacttggacttccaggattccctggccca
cctggccctccaggaacaccaggctatccttttggactgaagggacgtcaaggggatcca
ggtgaggcgggcagccgaggtttccctgggttcagaggacaaaaaggaattaaaggtgaa
acaggggactgtaaatgtattgaaagtgaagaagctagacggggtcctgctggtccacct
ggtccaccaggttttccaggccaaactggacatcctgggcagaaaggagataatggagat
caaggtcagcatggtcttccaggcttctctggtgcaaaaggatttcccggtgcagttgga
tttcctgggccaaaaggggagaaaggaaattctagatatattacaacaaaaggtaccaaa
ggagacccaggaggtcctggactatctggcattaaaggtgaagatgggtttccaggaaaa
gatggtatagatggcttaccaggtcttcctggccttccaggtgatggtgtaagaggttca
ccaggtgatcctggttatccaggaacacaaggtgaaaacggctttccgggagagattggt
ctgccaggtgcaggcttacctggcccgaaaggataccgtggaccttcaggtgactctgga
acatatggaaatccagggcttcaaggtcccccaggtcctcgaggtgctcctgcccaatta
gattgtaaccaagttactgaagatctttctaggggagatggcaccaagacagtttggtca
ggggcagaatgcatgagagcaccaaaaggagccccaggaaagccaggattgccaggagct
attggtgcaaaaggtactaaagggattccaggtgacccaggtctggatggattccaaggg
ctaaaaggttcacaaggtgatccaggtcgtgaaggattgccaggtcctcgaggttttact
ggaccccggggagatggaggcccaccaggtctaccagggctacagggaaatccaggcagt
gcaggaaaaccaggtgccccagggcctgcaggtccaaaaggaattgcaggtgaagtttta
ggagcagcaccgggcaccccaggagattttggaccatctggattcccaggattgaaaggc
ctacaaggagatcacggagtaccaggaattagaggagctggtggtactccaggtttgtca
ggatccaaaggacagaaaggacccccaggtcctcttggtttgcctggcctgccaggacaa
ccaggattgcatggattcccagggcttccaggacagcaaggacctcccggcagaactggc
tcaccaggatttgttggttcacttggtgccagaggagatcaaggtgaccaaggttttcct
ggtccagtgggcatgaaaggtctggccggtgacaaaggtgaactcggtaacaaaggagta
caaggaatacctggggtgcctggtctcccgggaatagacggaatgcctggttttccaggg
ttaaaaggtgctaaaggttcacctggtatcggaggtttcaaaggtatgttaggccagaaa
ggaaaaccaggactcaaaggaatcaaaggcgaagttggctcttttggcaatctgggtttt
aaaggtctacagggggaaccaggccataaaggtgaccgtggggaccagggtccagcagga
aaaccaccaaagatcatatcaagcatgctgtttgaggttaaaggtgagaaaggagatgta
ggagagactggcctaaaaggaggtttaggctttaaaggtagtaaaggaatgccaggctta
cctggcaaaccaggagttccaggtttgcctggatcaactagtcacattgaaggtgagaaa
ggagacgctggtattaaaggagtgacaggcgttcaggggtatcctggtacaattggacct
cctggcataagaggtttccctggaaccactggaatcaggggtgaaaagggtattgaagga
atcagaggtgattatggtagacctggctctgctgggcaaactggtgatcgaggagatact
ataaacttaccaggaagtgcaggtctgaaaggagaagctggtgtaaccggatcattgggt
gtgaaaggaaccagaggagataaaggtgaaggaggtgattctggttttactggcattgaa
ggcctaaaaggcacccaaggttttcctggtttaaaagggcaaaaaggcttcccagggctg
gttggaccaccaggatcacagggagacccaggtattcctggatttcaaggtgaaaaagga
agtcgtggatggcctggtttagcaggaaaagcaggtttacctgggttccgaggaatcagt
ggattggatggcttgccaggcagtaagggcttgccaggttccccaggtccggatgcatat
gggactgaaggtttcccaggtatttatggtgacaaaggggaagcaggcaaaccaagcact
attgaaggcaccagaggaccaccaggccagaaaggcgagagaggcaatccaggggaacga
ggcccaactggtgacctagggtctgatggaattccaggctttcctggagtttcaaacata
tcaggaatacctggtgatgtgggttctccaggtctagatggagtgccaggctatccagga
ccacggggcagacctggaattttagctccagcaggaagcaaaggagaagatggtcaaata
ggtgtgcttggagaagatggtcaaaaaggaactagaggtgaccctggaccaccagggaga
actggaatttcagggtaccctggaccaaaagggcataaaggcgcacaaggtctcatgggt
actcttggcttagtgggagcttttggtgacacagggcccactggacccaagggggacaga
ggacctactggttttcaaggacctccaggttctcctgggctgcctgcagtcccccctaag
ctggtcactcaccagggtgcagcaggcccacgtggaaatataggtccccaaggcatactt
ggtgagatggggccccacggtccaccaggtgatccaggttttagaggcccaccaggtaag
ccaggattccaaggacgaggtggcatgtcagctcttccaggttttagaggagatcaagga
ccatcaggttttccaggtctggtaggctttgagggtgaaccaggccgtccaggtaaccct
gggctaccaggtatgccaggtcgcagtgttaacattgggtaccttcttgtgaagcatagc
cagtctgagcaagagccaatgtgcccagttggtatgaacaaactctggagtggctacagt
ctactgtattttgaaggacaggaaaaagcacataaccaggatcttgggttggctggatcc
tgtttggctcattttagtaccatgcctttcctctactgtaaccctggggatgtctgttat
tatgcaagccgaaatgataaatcctactggctctcaaccacagcacctcttccaatgatg
cctgtggcagaagaagaaattagaccatatatcagtcgttgttccgtctgtgaagcccca
gctgttgcaattgctgtccatagtcaagatgtttctattccacactgccctgaagggtgg
cgcagtttatggattggatattccttcctcatgcacactggagctggtgatgaaggcgga
ggacagtcactggtttctcctgggagctgtctggaagacttcagagctactcctttcatt
gaatgcaatggtgcccgaggaacgtgccactactatgcaaacaaatatagcttctggctt
accactattaaccagcaattccagagcttgccctcagcagatacgctcaaggcaggtctc
atccgaactcatatcagcagatgtcaagtgtgcatgaaaaatttgtaa
DBGET
integrated database retrieval system
