Dermochelys coriacea (leatherback sea turtle): 119852467
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Entry
119852467 CDS
T09064
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc04512
ECM-receptor interaction
dcc04514
Cell adhesion molecule (CAM) interaction
dcc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119852467 (SDC1)
04514 Cell adhesion molecule (CAM) interaction
119852467 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119852467 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcc04131
]
119852467 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
dcc04090
]
119852467 (SDC1)
00535 Proteoglycans [BR:
dcc00535
]
119852467 (SDC1)
Membrane trafficking [BR:
dcc04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
119852467 (SDC1)
CD molecules [BR:
dcc04090
]
Proteins
119852467 (SDC1)
Proteoglycans [BR:
dcc00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
119852467 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
119852467
NCBI-ProteinID:
XP_038249542
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All DBs
Position
3:21790079..21824389
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AA seq
317 aa
AA seq
DB search
MRNVSAAWLLALFLQAACSQTTNLNLPPEDLDSSGGGGDDDDTFSGSGAGPLTNHSVVAW
NIPLEHANSSSRSTMSTGATVHQPAVDGTENPSEKEMVSSSPTSDVVPDEAVFSVKNETH
ELGSAAEKPTTNEAVVTTRSPTTHSLTVRVTATQASSTVHVIEPSIHSSSSSGVSKETFD
PSFTTISEEDAHSPTTTILPRGIYPIDEKETPSPEESSGDQGDFIFSEERIIPSESELAD
SSRDAEAAGTSQGLMDRKEVLGGVIAGGLVGLLFAVFLVGFMLYRMKKKDEGSYSLDEPK
QSNGGYQKPQKQEEFYA
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacgtgtcagccgcgtggttgttagccctcttcttgcaggcagcgtgctcgcaa
actacaaatttaaaccttcctcctgaagacctggactcatctggtggtggtggtgatgat
gatgatactttctccggctctggtgctggtcccttgaccaaccattctgtggttgcctgg
aatatccccttagaacatgcaaattcttcatcaaggtcaacaatgtctactggagcaact
gttcaccaacctgcagttgatggcactgaaaatccatctgaaaaggaaatggtatcatca
tcccccactagtgatgtggtgccagatgaggctgtcttttcagttaagaatgaaactcat
gaactcggctcagctgcagagaaacctacaacaaatgaggcagtcgtaacaacaagaagt
ccaactactcacagtcttactgtcagagtaaccgctacacaagcctcaagcacagtccat
gtaattgaacctagtatccatagctctagttcatctggtgtctctaaagaaacatttgat
cccagcttcaccactattagtgaggaagatgctcactccccaactacaacaattctaccc
aggggtatataccctatagatgagaaggaaactccatctcctgaagaaagctccggggat
cagggagactttatttttagtgaagaacgaataataccatcggaatctgaactggctgac
tcttcaagagatgctgaagctgctggaacttcccaggggttaatggacaggaaagaagtt
ctaggaggtgtcattgctggaggactagtaggcctgctgtttgcagtattcctagtggga
tttatgctgtacagaatgaagaaaaaagatgaaggcagctattcactggatgaaccaaaa
caatcaaatggaggataccaaaaaccacagaaacaagaagaattctatgcataa
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