Dermochelys coriacea (leatherback sea turtle): 119853175
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Entry
119853175 CDS
T09064
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54 isoform X1
KO
K10653
tripartite motif-containing protein 54
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119853175 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dcc04121
]
119853175 (TRIM54)
Ubiquitin system [BR:
dcc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
119853175 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-B_box
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-RING_6
CoiA_N
Sina_RING
CagA
MRP-S23
TRIM_CC
SpoIISA_toxin
APP_E2
Spectrin_Anc-1_2
Zn_ribbon_FGT1_2
Spectrin
DUF349
DUF1664
tRNA-synt_1g
DUF5799
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
119853175
NCBI-ProteinID:
XP_038251784
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All DBs
Position
3:910672..940943
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AA seq
382 aa
AA seq
DB search
MNFAVGFKPMLGDSHSMDSLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDIFQASNP
LWQSRGSSSVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPLHAKA
EQQLMCDEHEDEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPSVYKRQKSELSDGVAM
LVAGNDRIQAIVTQMEEICKAIEENSRRQKQQLCQRFDSLCSTLEERKKELAQRISREQE
ERVSHVRSLIRQYGEHLEISSKLVESAIQAMEEPQMAAYLQQSKELLKKITDMSKVSMSS
RPEPGYEKMDHFFVNVDYLAEMLRTIEFQTDSLGEDDTDGFAGGDGGDTGADEERPEGPE
ALEGAEAVGPRQKPASSPHGQH
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgcggtgggtttcaagcccatgctgggggactcgcacagcatggacagcctg
gagaaacagctgatctgccccatctgcctggagatgttcagcaagcccgtggttatcctg
ccctgccagcacaacctctgtcgtaagtgcgccaacgacatcttccaggcttccaacccg
ctgtggcagtcgcggggctcgagctcggtgtcgtcgggggggcggttccggtgcccctcc
tgccgccacgaggtcgtcctagaccggcacggcgtctacgggctgcagcgtaacctgctc
gtggagaacatcatcgacatctacaagcaggagtccaccaggcccctgcacgctaaggca
gagcagcagctgatgtgtgatgagcatgaggatgagaagatcaacatctactgcctgagc
tgcgaggtgcccacctgctccctgtgcaaggtgttcggggcccacaaggactgcgaggtg
gccccgctgcccagcgtctacaagcgccagaagagcgaactgagcgacggggtcgccatg
ctggtggctgggaacgaccgtatccaggccattgtgacccagatggaggagatctgcaag
gccatcgaggagaacagtcggcggcagaagcagcagctctgccagcgcttcgactccctg
tgcagcaccctggaggagcgtaagaaggagctggcgcagcgcatcagccgggagcaggag
gagcgggtgagccatgtgcgctccctcatccgccagtacggggagcacctggagatctcc
tccaagctggtggagtcggccatccaggccatggaggagccccagatggctgcgtacctg
cagcaatccaaggagctgcttaaaaagatcacagacatgtcgaaggtgtcaatgagcagc
cgcccagagcccggctacgagaagatggaccacttctttgtcaatgtggactacctggcg
gagatgctgagaaccatcgaattccagacagactcgctgggtgaggatgacacggacggg
tttgcaggcggggatggaggagacactggagccgacgaggagaggccagaggggccagag
gcactagaaggggccgaagcagtggggcccaggcagaagccagcaagctccccgcatggt
cagcactga
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