Dermochelys coriacea (leatherback sea turtle): 119853984
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Entry
119853984 CDS
T09064
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119853984 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcc03021
]
119853984 (PCF11)
03019 Messenger RNA biogenesis [BR:
dcc03019
]
119853984 (PCF11)
Transcription machinery [BR:
dcc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119853984 (PCF11)
Messenger RNA biogenesis [BR:
dcc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119853984 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DUF6980
Motif
Other DBs
NCBI-GeneID:
119853984
NCBI-ProteinID:
XP_038253676
LinkDB
All DBs
Position
1:19116191..19143883
Genome browser
AA seq
1747 aa
AA seq
DB search
MSGPESSAGGAEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPSTEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSTEESPAPTSTVS
SSGTSTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQ
QGATTMGSVQAPSKQHVSQTPHMTVKAPHQTSVQCEKNRPSPSSHFHDVKVVNRDPRLNR
MAQHSSHAKDQSHRKDFLSTTSQSDIKANKTLQAEKQNLSKQEKLKSSEKTQKKELDQLD
AKSKSPSPLKSKLSHTKDAKSQECEGIKVSEISKRDPRLKKHLQEKPDGKDDDTKEKRKN
MERKEKEEHKTSEHRPVGSRNKVINGIVQKQDCITEESEKQGGKLGRSSNRKRSRSRSPK
SRSPAAHSPKRRERRSPKRRLRSLSPTSSTPKIGKLRQSGPKQSHVEEFTLTTREERNSN
KRNLKQDSRDPRRLKKTQEDRPQETANQHSTKSTPEPKENVENWQGSKSSKRWKSGWEES
KNPQQNDEHQVSSKSPHQRHREIWAASKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANERLTSGEITQDEFLVVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGMKKKPLLS
DAELTYYEHKAKLKRTQVQHSFPRLDLLDPDDILGYDLTDALLSGIECEQTKGKRGGQFD
RKEQFGDRSRRHSPISGSRPYADDLSLLESRRRHDEQNSSKGTRSSKNFDPYDSWGETDE
FRDALRQQGKSTPEFQKIDGDGFCKFDNREERQMVGQSGVREEPRSPFSERFKRPRYEDP
EKTPFIESPGSRFAGIDVKQRLGALMEDRPLFDGSPRQPAARGGGDGQAGHFVDGPSNNS
SPRIEGPPAQASMRFEGPLGQVGGGAASQFDGPLGQAGGGGALRFDGPPGQIGTLRFEGP
LGQVGAGGALRFESPLGQVGGALRFEGPVGGRRLEGPVGQTMGGLRFEGPHGQPSGGLRF
EGPHGQPMGPHGQPAGGLRFEGPHGQPMGPRGQPGSGLRFEGPHIQPMGPHGQPGSGLRF
EGPHGPPVGPHGQPGGGLRFEGPHGQSVGPHVQGGGGLRFEGPHVQPGLGPRFEGPSVQT
GGGLRFEGPLGQTGPRFDGCHSSRFDSQPGQLSLLQRFDGLHGQPGPRFERAPGQQTAPR
FDGPPGQQPRFDTPVPQRFDGPQHQPGSRFAMPLGLQGPRFENVANPPASRLESYGQTGP
YSEHPNQTYNGPSHGMQFQRPEMFDASQGPNFNGPPGPGAQNFPNPLNRASGHYFDDKNL
QGPQYGNFNTLPNSVSVGNTQQPQQVPGLSVSSQAGPYSQGQTYLPVLAQNPGSFVQTQA
GSLPLSYPDNHLGQLDVNELFSKLLSTGILKVSKTTDSTSAQVNETSTQPAPEEEEDDQE
QSEDQDIPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQ
NRTEKDISRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKE
FQSVPAGPAGVDESCEICQEQFEQYWDEEEEEWHLKNAIRVEEKIYHPSCYEDYQKTSSF
DCTPSPSKTPVENPLNIMLNIVKQEIQETCNSPKVKEEPVDTPATCMEESTPASTDIKTE
TDKVEPV
NT seq
5244 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcccggagagcagcgcaggcggcgccgaggcccgggaggacgcgtgccgcgat
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctccttctacagagaagcttcctgttatgtaccttatggattccattgtc
aagaacgttggaagagagtatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgaaattttccctttgaagaaactgtatgctcttgatgtcagagtcaactcatta
gatcctgcttggccaattaaacctctacccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgactgaggaatctcctgcacctacttctacagtcagt
tcatctggtacctcaactcctccagctgttcctgaaattcaaaagaatttgacccaagag
caactaataagacaacaactgctggcaaagcaaaaacagttgctggaacttcaacagaaa
aaattagagctggagttagaacagactaaagcacagttggcagtttctcttagtgttcaa
caaggggcaaccaccatgggttcagttcaagcaccttccaaacaacatgtttcacagact
cctcatatgacagtgaaagctcctcaccagacttctgtgcaatgtgaaaaaaacagacca
tctccatcttctcactttcatgatgtcaaagtagtaaacagagatcctcgtcttaataga
atggctcaacattcttctcatgctaaagatcaaagtcataggaaagattttctgtctacc
acaagtcaatctgatatcaaggcaaacaaaacactgcaggctgaaaaacaaaatttgtca
aagcaagaaaagttaaaatcaagtgagaaaacacagaagaaagaacttgatcagttagat
gcaaaatctaaatcaccatcccctttaaaaagcaagttatcccatactaaagatgctaaa
agccaagaatgtgagggtataaaagtatctgaaattagtaaaagagatccaagattaaaa
aagcatcttcaggagaagccagatggtaaagatgatgacacaaaggaaaagagaaaaaat
atggagagaaaagaaaaagaagaacataagacatctgaacacagacctgttggcagcaga
aataaagtaattaatggcattgttcaaaaacaggactgtattacagaagaatcagaaaaa
cagggtggaaaacttgggagatcaagtaatagaaaaaggtcccgatcacgctctcctaag
tctcgatctccagctgcccattcaccaaagagaagagagaggagatcacccaaaagaaga
ctgaggagtttgtctcctacttcctcgactcctaaaattggaaagctccgtcagtcaggg
cctaagcaatctcatgttgaagagtttacactaactacaagggaagaaagaaattctaat
aaaaggaaccttaaacaggattcacgagatccaaggagattgaaaaaaactcaagaagac
agaccacaggaaactgcaaatcagcattctacaaagtccactccagaaccaaaggagaat
gtggaaaattggcaaggttccaaatcgagcaaaagatggaaatctggttgggaggaaagt
aaaaatccacagcagaatgacgaacatcaagtatctagtaaatctcctcatcagaggcac
agggagatctgggcggccagtaaaggaattttgtcacctcgagccccaaagcaacagcat
cgattaagtgtggatgccaatttgcagattcccaaagaattgacttctgcaagcaaacga
gagctacttaaaaaggcaaatgaacgtctgacatctggggaaataacacaagatgagttc
cttgttgtggctcatcagattcgtcaactgttccaatatcaggaagggaagcacagatgc
aatgtgtgggatagtcctacagaagaaaaatgtggtatgaagaagaaaccccttctgtct
gatgctgaattaacgtattatgaacataaagctaaactgaaaagaacacaagttcagcat
tcatttccaagacttgatctgttagatcctgatgatattttagggtatgatttgactgat
gcattgctttctggaatagaatgtgagcaaacaaaaggtaaacgtggaggacaatttgac
agaaaagagcaatttggagacaggtcaagacggcattctcctataagtggcagtagacct
tatgctgatgatctttcactacttgagagccggcgaagacatgatgagcaaaattcttcc
aaaggaacaagaagttctaaaaacttcgatccttacgatagttggggagaaacagatgaa
tttagagatgcactcaggcaacaagggaaaagtacaccagagtttcagaaaattgatgga
gatggattctgcaaatttgataatcgtgaagaaagacagatggttggacagagtggtgtt
cgagaggaaccgagatccccattcagtgaacgtttcaagagacctagatatgaagatcca
gagaaaacaccatttatagagagtccaggatcaagatttgcaggcattgacgtaaagcag
agattaggtgcactcatggaagacagaccactatttgatggctcacctagacagcctgct
gcaaggggagggggagatggacaagctggtcattttgttgatgggccttctaataattca
agccctagaattgaagggccacctgcacaggcttctatgaggtttgaagggccactaggt
caggtgggaggaggagctgcgtctcagtttgatgggccactgggacaggcagggggaggg
ggtgccctgaggtttgatgggccaccagggcagataggcaccctcaggtttgaggggccc
cttgggcaagtaggtgcagggggtgcactaaggtttgaaagccccctgggacaagtaggg
ggtgctttaagatttgaggggcctgtgggtggtcgcaggttagaggggcctgtaggccag
actatgggtggtctcagatttgaggggcctcatggtcagccatcgggtggtctcaggttt
gagggaccccatggtcaacctatggggcctcatggccagccagcaggtggactcagattt
gagggaccccatggtcagcctatggggcctcgtggtcaaccagggagtgggctcaggttt
gaggggccacatatccagccaatggggccccatggtcaaccagggagtgggctccgtttt
gaggggccacatggtccgcctgtggggccacatggtcaaccgggaggaggtctgcgtttt
gaggggccccatggtcagtctgtaggaccacatgtccagggagggggtggtctcaggttt
gaaggtccacacgtccagccaggacttggtcctaggtttgagggtccatcagtccagacg
gggggtggacttagatttgaagggcctttgggtcagactggtccaagattcgatggctgt
cattcatccagatttgatagtcaacctggtcagctatcccttttgcaaaggtttgatggt
ttacatggacaacctggcccaagatttgaaagggcaccaggtcaacagacagctcctagg
tttgatggaccacctggtcagcagccacgatttgatacaccagtacctcaaaggtttgat
ggtcctcaacaccagccaggttcaaggtttgcaatgccccttggtcttcaaggtccaagg
tttgaaaatgtagctaatcctcctgcctcaagactggaatcttacgggcaaactggtcca
tacagtgaacatcccaatcagacttacaacgggccatcccatggtatgcagttccagaga
cctgaaatgtttgatgcctctcaaggaccaaatttcaatgggccccctggccctggagca
cagaactttcccaatccacttaacagagcatctggacattattttgatgacaagaatctt
cagggtcctcaatatggaaacttcaataccttgcctaattctgtgtcagtaggaaatact
cagcaaccacagcaggttcctggtctatctgtatcttctcaagctggaccttatagtcaa
ggacaaacatatttaccagtacttgcacaaaatcctggaagctttgttcagactcaagca
ggatcccttccactttcatatcctgataatcaccttggccagcttgatgtaaatgagttg
ttctctaaactgctttcaacaggaatcctcaaagtgtcaaaaactactgattccacttca
gcacaagtgaatgaaacttctacccagccagctcctgaagaggaggaggatgaccaggag
cagagtgaggatcaagacatcccagacctcactaactttacagttgaagaactaaaacag
cgttatgatagtgttataaatcgactgtacactggtattcagtgttactcctgtggaatg
aggtttacaacttcacagacggacgtatatgcagatcacttggactggcattaccgacaa
aatcgcactgaaaaggacattagcagaaaagttactcacagaaggtggtactacagttta
acagactggatagaatttgaagaaatagctgatctagaggaacgtgcaaagagccagttc
tttgaaaaagtacatgaagaagttgtattgaagacacaagaagctgctaaagaaaaagag
tttcaaagtgttcctgctggaccagcaggagtagatgagagctgtgaaatttgccaagag
caatttgaacaatattgggatgaggaagaggaagagtggcatttaaagaatgctattagg
gtagaggaaaagatttaccatccatcatgttatgaagattaccaaaagacatcatcattt
gattgtacgccatctcccagcaagacccctgtggaaaacccactaaatattatgttgaac
attgtcaaacaagaaatacaggagacctgtaacagtcctaaagtcaaagaagaacctgtc
gacacccctgctacttgtatggaagagagcacacctgcgtctacagatattaaaacagaa
actgataaagttgaaccagtttaa
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integrated database retrieval system
