Dermochelys coriacea (leatherback sea turtle): 119855080
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Entry
119855080 CDS
T09064
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc03015
mRNA surveillance pathway
dcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119855080
09123 Folding, sorting and degradation
03018 RNA degradation
119855080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcc03019
]
119855080
03041 Spliceosome [BR:
dcc03041
]
119855080
Messenger RNA biogenesis [BR:
dcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119855080
mRNA cycle factors
Stress granule specific factors
119855080
Spliceosome [BR:
dcc03041
]
Complex C
Other components
Complex C specific factors
119855080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RRM_3
RRM_occluded
YflT
PABC_AtC3H46
POP1_C
Motif
Other DBs
NCBI-GeneID:
119855080
NCBI-ProteinID:
XP_038256455
LinkDB
All DBs
Position
4:85911871..85987323
Genome browser
AA seq
543 aa
AA seq
DB search
MDEKDMTSVYNDLKGVNSNGGEELFGVVKAGSNSTKPNFAFGNILSCKVVCDENGSKGYG
FVHFETQEAAEIAIEKINSMLLNDHKVFVGRFKSHKEREAELGAKAKEFTIIIIIKNFGE
DMDDERLKELFGKFGPSLSVKVMTDESGKTKGFGFVSFERREDAQKAVDEMNGKELNGKQ
IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI
TSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTN
QXMQRMASVRAVPNPVINPYQPAPPSGYFMAALPPTQNRAAYYPTSQLAQLRPSPRWTAQ
GARPHPFQNMPGAIHPAAPRPPFITMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAPAA
ATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTASMLASAPSQKQKQ
MLGERLFPLIQAMHPTQAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK
EAA
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggatgagaaggacatgacaagtgtctacaatgatctgaagggagtaaattctaatggt
ggagaagaattgtttggagtggtaaaagctggaagcaatagtacaaagccaaactttgct
tttggaaacatcctctcctgtaaggtagtatgtgatgaaaatgggtccaagggctatgga
tttgtacattttgagacccaggaagcagcagaaatagctattgaaaaaataaacagtatg
ctgcttaatgaccacaaagtatttgttggaaggtttaaatcccataaagaacgagaagca
gaacttggagctaaagcaaaggagttcaccatcataatcataatcaagaattttggagaa
gacatggatgatgaaagacttaaggaactctttggcaagtttggcccttccttaagtgtc
aaagttatgaccgatgagagtggaaaaaccaaaggctttggctttgttagttttgaaaga
cgtgaagatgctcagaaagctgtggatgagatgaatggaaaggagctcaatggaaagcaa
atttatgttggccgggctcagaaaaaagtggaaagacaaacggagctcaagcgcaaattt
gaacaaatgaagcaggataggatcaccagataccagggtgtaaacctttacgtgaaaaat
cttgatgatgggattgatgatgagcgtttacgaaaagaattctccccatttggtacaatc
actagtgcaaaggtcatgatggaaggcggccgcagtaaaggatttgggtttgtatgcttt
tcttcaccagaagaagcaaccaaagctgtcacagaaatgaatggtagaattgtggccact
aaaccattatatgtagctctagcccaacgcaaagaagagcgccaggctcacctcaccaac
caataaatgcagagaatggcaagtgtgagagcagtacctaatcctgtaatcaacccctac
caaccagcacctccttcaggttacttcatggctgctctcccaccgactcagaaccgtgct
gcatattatccaactagccaacttgctcaactcagaccaagtcctcgctggactgctcag
ggtgctagacctcatccattccagaacatgcctggtgctatccacccagcagctcccaga
ccaccatttattactatgagaccagcttcttcacaggttccacgagtcatgtcaacacaa
cgtgttgctaatacatcaacacagacaatgggtccccgtcctgcagcagctcctgctgcg
gccactcctgctgtacgcacagttccacagtacaaatatgctgcaggtgttcgtaatcct
cagcaacatcttaacacacaaccacaggttgctatgcagcagccagctgtccatgtgcaa
ggtcaggaacccttgactgcttccatgttggcttctgccccttcacaaaaacaaaagcag
atgttaggtgaacggctgtttccccttattcaagctatgcaccctactcaggcaggtaaa
atcaccggtatgttgttggagattgacaactctgaactccttcatatgcttgagtctcct
gagtctcttcgttcgaaggttgatgaagctgtagctgtactacaagcccaccaagctaaa
gaggctgcttag
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