Dermochelys coriacea (leatherback sea turtle): 119855226
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Entry
119855226 CDS
T09064
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dcc00536
]
119855226 (COL25A1)
Glycosaminoglycan binding proteins [BR:
dcc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119855226 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
119855226
NCBI-ProteinID:
XP_043369247
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All DBs
Position
4:complement(33461001..33886450)
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AA seq
701 aa
AA seq
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MLGKSQEAKGQDGNGEPSCLGGQRCCLSWTLPSSSLLAAFLSVVAVASCVYLGVKTSDLH
ARVSAIESAQGDFSAAAASYQLLPGFSLDQLNSMMQEKVERLLAQKSYEHLAKIRIAREA
PPECNCPAGPPGKRGKRGRRGETGPPGQPGPQGPPGPKGEKGDQGDQGPRMVFPKINHGF
LSADQQLIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGNPGEQG
LMGPQGPPGQKGSVGVSGVPGIDGHMGEPGLPGEVGESGAPGLKGDPGEQGEKGATGENG
PKGDMGEKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGL
PGLPGTKGERGEAGPPGKGERGEPGVPGPKGKSGESGTRGPKGSKGDPGDKGDSGAIGPR
GPPGQKGDQGATEIIDYNGNIHEALQRITTLTVTGPPGPPGPQGAQGPKGEPGSQGTPGA
EGEQGPKGSKGDVGESGMPGEKGGIGLPGLPGANGMKGEKGDVGLPGPQGPSIIGPSGPP
GPHGSPGPMGPHGLPGPKGASGLDGKPGPRGMDGPVGPHGPAGPKGDRGEKGAVGDPGPR
GPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGFRGIKGEKGEPGQPGLDGLDAPCQLV
QYFSFLPTLHAIPLYIVSHSQCKVVVFLSGLYIIHLIHACA
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgttggggaaaagccaagaagccaaagggcaggatggcaacggggagccgagctgcctt
gggggacagcgctgctgccttagctggactctgccctccagttcgctgctggctgctttc
ctgtcagtggtggctgtagcctcctgtgtgtatctgggggtgaagaccagtgatctacat
gcgagggtctctgccatcgagagcgcccaaggggacttctctgctgctgcggcttcttac
cagctgctgcccggcttctccctggatcaactaaattcaatgatgcaagaaaaagtggag
cgacttctagctcagaaatcctacgagcatttggcaaaaataagaatagcaagagaagcg
cctcccgagtgcaactgcccagcaggccctccagggaaacgaggtaagaggggcagaaga
ggagagactggacctcctggtcaacctggtcctcaaggccctcctggtccaaaaggtgag
aagggagatcaaggtgatcagggccctcggatggtgtttcctaaaatcaatcatgggttt
ctctctgctgatcagcagctcattaaacgccgcctcattaagggtgaccaaggacaagct
ggaccccctggtcctccagggccaccaggacccagaggtcctccaggagacactggcaaa
gatggcccccgaggaatgcctggagtaccgggagagccaggaaatccaggtgaacaaggg
ttgatggggcctcagggacctccaggacaaaagggttctgttggagtgtctggtgttcca
ggaatagatggacatatgggtgagccaggcttgcctggtgaagtgggagaaagcggagca
ccagggcttaagggtgaccctggagaacaaggagaaaagggtgctactggagaaaacgga
cccaaaggtgacatgggtgaaaagggtgatcctggatcttctgctgcaggaattaaggga
gaacctggagaatctggtcggccaggacaaaagggtgaaccaggtcttcctgggcttcct
ggactccctgggataaagggtgaaccaggtttcattggtccacagggagaacctggatta
ccagggttaccaggaacaaagggtgaaagaggagaagcagggcctcctggaaagggtgag
cgaggtgaacctggagttcctgggccaaaggggaaatcaggcgaatctggaactagaggc
ccaaaggggtcaaagggtgatcctggagacaaaggtgattcaggagcaataggtcctagg
ggcccgcctggacaaaagggagatcaaggtgcaacagagataattgactacaatggcaat
atccatgaagctctgcagaggattaccaccctaactgtcacgggtccaccagggccaccc
ggacctcaaggagcacaaggaccaaagggtgaaccaggatcccaaggaactccaggagct
gaaggggagcagggtcctaaaggctcaaagggggacgtgggtgagtctggcatgccagga
gaaaagggaggaattggactcccaggcttaccaggagccaatggtatgaaaggagaaaaa
ggagatgttggtttgcctggtcctcaaggtccttctatcataggaccctcaggaccacca
gggccgcatgggtcaccaggccctatgggaccccatggactgcctggcccaaagggagca
tctggcttagacggaaagccaggaccccggggtatggatggcccagtcggtccacatggc
ccagcaggtcctaaaggagatcgaggtgaaaagggagctgttggtgaccctggacccaga
ggaccatatggtttgcctggcaaagatggcgagcctggccttgatggtttccctggtcct
cgtggagaaaagggtgacctaggcgaaaagggagaaaagggattccgtggaattaagggg
gaaaaaggggagccaggccagccaggcctggatgggctggatgccccttgccaattggta
cagtatttctctttcctaccaaccctgcatgcgattcctttgtatatagtcagtcattct
cagtgtaaagtggttgtttttctgagcggactttacattatccacctaatacatgcatgt
gcatga
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