Dermochelys coriacea (leatherback sea turtle): 119855414
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Entry
119855414 CDS
T09064
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119855414 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcc03019
]
119855414 (MTREX)
03041 Spliceosome [BR:
dcc03041
]
119855414 (MTREX)
03009 Ribosome biogenesis [BR:
dcc03009
]
119855414 (MTREX)
03016 Transfer RNA biogenesis [BR:
dcc03016
]
119855414 (MTREX)
Enzymes [BR:
dcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119855414 (MTREX)
Messenger RNA biogenesis [BR:
dcc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119855414 (MTREX)
Spliceosome [BR:
dcc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119855414 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
119855414 (MTREX)
Ribosome biogenesis [BR:
dcc03009
]
Eukaryotic type
Pre-60S particles
Helicases
119855414 (MTREX)
Transfer RNA biogenesis [BR:
dcc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119855414 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
DUF6620
Motif
Other DBs
NCBI-GeneID:
119855414
NCBI-ProteinID:
XP_038257192
LinkDB
All DBs
Position
5:35503946..35602331
Genome browser
AA seq
1034 aa
AA seq
DB search
MADAFGDDLFSVFEDDSAASAAKKGKAAAAEAASKAGKCSDGKSPAGSTNIPGKNKREAE
VDSTDYAIFGKKSKIEDVSEDMNLADLMPKVKVQAVETVEGCTHEVALPANEDFVALKPR
TGKASKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGT
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVAEKVNKL
DDQYNKIEIPNEESVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEDDD
FGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPAKPDEKGEMQV
VPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKIEAFEHRMYSHPLHNDSSLETVYKLCERKAQIAVDIRTAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMD
VVYTWANGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgatctgttcagcgtgttcgaggacgattccgccgcctct
gcggccaagaagggcaaagcggccgcggccgaggctgccagcaaggccgggaaatgctca
gacggcaaatctccggcagggtctacgaacatcccaggaaaaaacaaaagagaggcagag
gttgatagcacagattatgccatttttggaaagaaatcgaagatagaggatgtttcagaa
gatatgaatctggcagacctgatgccgaaagtaaaggtgcaagctgttgagactgttgaa
ggatgtacacatgaggttgcacttcctgcaaatgaagacttcgtagccctcaagccaaga
actggaaaagcttcaaaggaatatccattcattcttgatgcttttcaaagagaagccata
ctttgtgtggataacaatcagtctgttttagtgtcagctcatacatcagctggcaaaact
gtgtgtgcagagtatgcaattgccttggctttgagggagaaacagcgtgtgatatttact
agtcccattaaagctctgagtaaccagaagtatcgtgagatgtatgaagaatttcaggat
gttggtttgatgactggggatgtcaccattaatcctacagcttcttgtcttgtaatgaca
acagagattttgagaagtatgctctacagaggttctgaggttatgcgagaagttgcctgg
gttatatttgatgaaatacattatatgagagactcagaacgtggtgtggtttgggaggag
accattattttgctgcctgacaatgttcactatgtgtttctttctgccactattccgaat
gcccgccagtttgctgaatggatttgccatcttcataaacagccttgccacgtgatttac
acagattatcgacctactcctctgcaacattatattttcccagcaggaggggatggactc
caccttgtggttgatgaaaatggtgatttcagagaagataattttaacacagcgatgcaa
gtacttagagatgcaggtgacttagcaaaaggagatcagaagggcaggaaaggaggaaca
aaaggaccatcaaatgtatttaaaatagtgaagatgatcatggaaaggaatttccagcct
gtaattatattcagtttcagtaagaaagactgtgaagcctatgcacttcagatgacaaaa
ttagacttcaacacagatgaagaaaaaaagatggttgaagaagtatttaataatgcaatt
gattgtctgtctgatgaagacaagaaacttcctcaggttgagcatgtgcttcctcttttg
aagcgaggaattggcatccatcatggtggtttgcttcctattttaaaggaaaccattgaa
attcttttttctgaaggattgataaaggccttatttgcaactgagacctttgctatggga
ataaatatgccagccaggacagtgctgttcacaagtgcccgtaaatttgatgggaaagat
ttcagatggatctcctcaggtgaatatattcagatgtctggtcgtgcaggacgtcgaggt
atggatgacagaggaatagtgattcttatggtggatgagaagatgagcccaacaattggc
aaacagcttcttaagggctcagctgatcctctaaacagtgcttttcacttgacatacaac
atggtgttgaacttgctccgagtagaggaaattaaccctgaatacatgttagaaaaatcc
ttctaccagtttcaacactacagagctattccaggagtagcagaaaaggtaaataaattg
gatgaccagtacaacaaaatagaaattccaaatgaggaaagcgtggttatctactacaaa
atccgacagcagcttgctaaactgggtaaagaaattgaggaatatgttcacaagccaaaa
tactgcttgccgtttttacagccaggcaggctggtaaaggtaaaaaatgaagatgatgat
tttggttggggagtggtggttaacttttccaagaaatcaaatgttaagcctaactctggt
gaactggacccattatatgtagttgaagtcctattacattgcagcaaagagagtttgaag
aattctgctactgaggctgcaaagccagcaaagcctgatgagaaaggagagatgcaggtg
gttcctgttttggttcatcttctctcagctatcagcagtgtccgactttacatacccaaa
gacctgaggcccatcgacaataggcaaagtgtgttaaaatctatacaggaagtacagaag
cggttccctgatggagtaccattattggaccccattgatgacatgggcatcaaagaccaa
ggactgaaaaaagtcatccaaaaaatagaggcttttgaacataggatgtattcacatcca
cttcacaatgattccagtttggagactgtatataagctttgtgaaagaaaagcacagatt
gcagtggatattagaacagcaaagcgagaactaaagaaagccagaactgtcttacaaatg
gatgagctcaagtgccgcaaacgtgtattgagaagattgggttttgccacatcttctgat
gtcatagagatgaaaggacgagttgcctgtgaaatcagcagtgctgatgaactgctcctg
acagaaatgatgtttaatgggctcttcaatgacttatctgcagaacaagcaactgcatta
ctaagctgctttgtatttcaagagaattccagtgaaatgcccaaattgacagagcaattg
gcaggaccacttcgccaaatgcaggaatgtgctaaaagaattgccaaagtttcagcagaa
gctaaattggaaatcgatgaggaaaattacctaaactccttcagacccaacctaatggat
gtagtatacacatgggcaaatggagctacttttgctcatatctgcaaaatgaccgatgtc
tttgaaggtagcataattcgttgtatgaggcggctagaagaattgcttcgacagatgtgt
caagcagcaaaggccataggaaacacagagctggaaaataagtttgccgaaggaattacc
aaaatcaagagagacattgtgtttgctgcaagcctctacctataa
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