Dermochelys coriacea (leatherback sea turtle): 119857046
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Entry
119857046 CDS
T09064
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc04140
Autophagy - animal
dcc04142
Lysosome biogenesis
dcc04148
Efferocytosis
dcc05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
119857046 (VPS39)
04140 Autophagy - animal
119857046 (VPS39)
04148 Efferocytosis
119857046 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
119857046 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcc04131
]
119857046 (VPS39)
Membrane trafficking [BR:
dcc04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
119857046 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
SAM_CEP-1_C
LIF1_N
DUF4145
Motif
Other DBs
NCBI-GeneID:
119857046
NCBI-ProteinID:
XP_038261279
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All DBs
Position
6:64744677..64777254
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AA seq
901 aa
AA seq
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MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDIGEVTSSESGCCNRF
EVTLEKSNKNFSKKIQQIHVVSQFKILVSLLVPALPTPACVECCCLRSQNNIYVHDLLTF
QQITTVSKAKGASLFTCDLQHSDTGEEVLRMCVAVRKKLQLYFWKDREFYELQGDFSVPD
VPKSMAWCENSICVGFKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDL
TVVLNEEGICTQKGALNWTDIPIAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPR
FITSGGTNIVYVASNHFVWRLLPVSIATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQI
HHIKNLYAFNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLS
GAELEKAHLALIDYLTQKRSHLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLL
KCYLHTNVALVAPLLRLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQ
SKKANSPLKGHERTVQYLQHLGTENLHLVFLYSTWVLRDFPDDGLKIFTEDLPEVESLPR
DKVLNFLIESFKSLAIPYLEHIIHVWEEPGSEFHDCLIQLYCEKVQGLMKEYLCSFPADK
IPVPAGEEEGELGVYRKKLLCFLKISSCYEPNRLISDFPFDGLLEERALLLGRMGKHEQA
LIIYVHILKDTKMAEMYCHKHYDRSKDGNKDVYLSLLRMYLSPPSVHCLGPIKMELLEPQ
ANLQAALQVLELHHSKLDTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFNQVLKNLL
HAEFLRVQEERILHQQVKCIITEEKVCTVCKKKIGNSAFARYPNAVVVHYFCSKEVSTAD
T
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccggtgccgatcctggagaagctgccgctgcagatagactgt
ctggcggcttgggaggaatggctgcttgttggcaccaaacaagggcatctcctcctttac
aggatcaggaaggatataggagaggttacatcatcagaaagtggctgttgcaacagattt
gaagtgacactagagaaatccaacaagaacttctcaaaaaagattcagcagattcatgtt
gtttcccaatttaaaattctggtcagtttgttagtcccagctctcccgactccagcatgt
gtagaatgctgctgcctgcgttctcaaaataacatttatgtccacgacctgttgacattt
caacaaatcaccacagtctctaaggcaaaaggtgcatctctgttcacctgtgacttgcag
cactctgatacaggggaggaggtactgaggatgtgcgtggcagtgcggaagaagctacag
ctgtatttctggaaggacagggagttctatgagctacagggggacttcagtgtgccggat
gtgcccaagtctatggcatggtgtgaaaattctatctgtgtaggtttcaagagagactat
tatctgataagggtggatggaaaagggtccatcaaagaactgttccccacagggaagcaa
cttgaaccattggtggctcccttagcagatggaaaagttgcagttggtcaagatgatcta
acggtagtacttaacgaagaagggatctgtactcagaaaggtgccttgaattggacagac
attcccattgctatggaacatcagcctccatacatcattgcggtgctaccaaggtatgtg
gagattcgcacttttgaaccccggctgctggtgcagagtattgagctgcaaagaccacgc
ttcatcacctctggaggtacgaatattgtgtatgtggccagcaatcattttgtttggcgt
ctccttccagtctccatagcaacccagatccagcagcttctccaagacaagcagtttgaa
ttggctctgcagttggcggaaatgaaagatgattcagatagtgaaaagcaacaacagatt
catcacattaagaacctctatgcctttaacctcttctgccagaagcgcttcgatgaatcc
atgcaggtttttgccaagctcggtacagatcccactcatgtgatgggtctgtatcctgac
ttgctgcccactgattacaggaaacagttgcagtatcctaatcctctgccagtgctctct
ggggctgagctggagaaagcacacttagcactcatagactatctaactcagaaaagaagt
catctggtaaagaagttaaatgactccgaccaccagtccagcacctcacccctcatggaa
ggaacacccaccatcaaatccaaaaagaagttgctccaaatcattgacaccaccttgctc
aagtgttacctacatacaaatgtagctctggtagcaccattgctacgactggagaataat
cactgccacatagaagagagtgagcatgtactgaagaaggcacacaagtacagtgagctg
ataatactgtatgagaagaaagggctgcatgaaaaagctctgcaggtgctagtggatcaa
tcaaagaaagccaactctcctttgaagggccatgaaaggacagtgcagtatctacagcat
ttgggcacagaaaacttgcacttggtgttcctctattccacatgggtgctcagagacttt
cctgatgatggattgaagatatttacagaagaccttcctgaagtagaatccctgcctcga
gacaaagtactcaacttcttgatagaaagctttaaaagcctggctatcccttacctggaa
cacatcatccatgtttgggaggagccgggctcagaattccacgattgtctgatccagctg
tactgtgagaaggtgcaaggattaatgaaggaatatctctgctccttccctgcagataaa
attccagtgcctgctggagaggaggaaggggagctgggggtgtatcggaaaaagctgctc
tgttttcttaagatttctagctgctatgaacctaataggcttatcagtgatttccccttt
gatggcctcctagaagaacgtgccctgctgttgggtcgtatggggaagcatgaacaagcc
ctcattatttatgtccacattctgaaggataccaaaatggctgaaatgtactgccataaa
cactatgacagaagcaaagatggcaacaaagatgtgtatctgtctctgctccggatgtat
ctatccccacctagtgttcattgcctggggccaatcaagatggaactgttggagcctcaa
gccaatctccaggctgccctgcaggttttagaattgcaccacagcaaattggatactact
aaggctataaacttgctcccagcaaatactcaaattagcgagattcgaatcttcctagaa
aaagtccttgaagaaaatgcccagaagaagcgattcaaccaagtactaaaaaatcttctt
catgcagaattcctgagggttcaggaggagaggattttgcatcagcaggtgaagtgtatt
atcacagaggaaaaagtgtgcactgtgtgtaaaaagaagataggaaatagtgcatttgcc
cgataccctaatgcagtagttgtgcactacttctgctccaaagaagtcagtacggcagat
acctga
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