Dermochelys coriacea (leatherback sea turtle): 119857615
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Entry
119857615 CDS
T09064
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119857615 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcc03019
]
119857615 (PATL1)
Messenger RNA biogenesis [BR:
dcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119857615 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
119857615 (PATL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
119857615
NCBI-ProteinID:
XP_038262718
LinkDB
All DBs
Position
6:complement(9610369..9630437)
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AA seq
770 aa
AA seq
DB search
MFRYQSLEECPLDEDEDAFQTLGEEDEDIDQFNDDTFGAGAIDDDWQEAHERLAELEDKP
ATARELEDGAVSDEMDLLGHHEENLAERLSKLVIENELEDPAIMQAVQTQPPMPQPGGLN
SSIWDGSAVLRRIRGPLLTQEVPSVSVLEYALPQRPPQGQEDERDLSERALPRRSSSPVI
GSPPVRAVPIGTPPKQAAVPNFNQQILCPKPVHIRAPMQQRYPSPYGERMSPNQLCNVPN
SSLLGHPFPPSVTPVFTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLTSMNPKLLQGR
VGQMMSPASGFRAFFGAPPPPAPPSSQQQHPSCPGSHLQNLRPHPQMFRPDTTHLHPQHR
RLLHQRQQQNRNQHRSLNGSAGDRAGHRSSHQEQLRKDPYANLMLQREKDWVSKIQMMQL
QSTDPYLDDFYYQNYFQKLEKVSAAEEMHGDGPKKERTKLITPQVAKLEHAYKPVQFEGS
LGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYER
RYLLSLEGERPALMEERKQKICDMYDNLRGKTPGQESRPSDDHFVQIMCIRKGKRMVARI
LPFLSTEQAADILMATARNLPFLIKKDAQDEVLLCLLRPFSLILYHLPTGTVTSLLQQLA
NLPQSATAPAPANLHLAAVLQNKFGLSLLYLVLSRGEELQNSNAATELMQDNQWTELMFM
ATRELLRIPEAALAKPVSTPSNLLSLFSRYVDQQKLNVLETKLQLVQGIR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctaccagtccctggaggagtgtcctctggatgaagatgaagatgcttttcag
accctgggcgaggaggatgaagatatcgaccagttcaatgatgacacgtttggagccggt
gctattgatgatgactggcaggaggcacatgagcgacttgcagaactggaagacaagcct
gcaacagctagagagttggaagatggggcagtcagtgatgagatggacctgctggggcac
catgaggagaacctggctgagaggctgagcaagctggttatcgagaatgagctggaagat
ccagccatcatgcaggctgtgcaaacccagcctccaatgccgcagccaggaggcctcaac
tccagcatctgggatggatccgcagttctgaggcgcatccgaggaccgcttctcactcag
gaggtgccctcggtgtctgtgctggaatatgctctgcctcagagacccccacagggccag
gaggatgagcgggacctctcggagcgggcgctgcccaggcgctcgtcctccccagtcatt
gggagcccccctgtcagggctgtccccatcggcaccccaccaaagcaggccgccgtgccc
aacttcaaccagcagatcctgtgtccgaagcctgttcacatccgggccccgatgcaacag
cgttatccttccccctacggcgagaggatgtccccaaaccagctctgcaatgtcccgaat
tcttccctgctgggccacccgttccctcccagcgtcactcccgttttcacccaccttcag
agagcgcagcttctaggaggagcacaggctggacgaatgtctcccagccagtttgctcgt
gtctctggactcgttggcagccccctcacatccatgaaccccaagttgcttcaaggcaga
gttgggcagatgatgtctccagccagtgggttccgtgccttttttggagcgccaccgcct
cccgcgccaccctcatcccagcagcagcacccctcatgtcctgggtcccacttgcagaac
ttaaggcctcacccgcagatgttcagaccagatacaactcaccttcacccgcagcatcgg
cggctcttacatcagagacagcagcagaacaggaaccagcaccgtagtctgaatggctcg
gcgggggaccgagcgggccaccggagcagccatcaggagcagctgcggaaggacccctat
gccaatctcatgttgcaacgggaaaaggactgggtatcaaagatccagatgatgcagttg
caaagcactgacccttacctggatgacttctactatcagaattacttccagaagctggag
aaagtgtcagcggcagaggagatgcacggcgatggccccaagaaagaacgtactaaactc
atcacaccccaggtggccaagttagagcatgcctacaagccagtgcagtttgagggctcg
ctggggaagctcacagtctccagtgtaaataacccccggaaaatgattgacgcggtggtg
acctcccgcagtgaggatgatgagacgaaggagaagcaggttcgagacaagagacgtcag
accctcgtcaccattgagaagacatacagcctcctcctggatgtggaagactatgagagg
cgctacctcctgagcctggagggggagcggccagcgctgatggaggagagaaagcagaag
atctgtgacatgtatgacaatctgagggggaaaacgcccggccaagagagcaggccgagt
gatgaccactttgtgcaaatcatgtgtatccggaaagggaagcgtatggttgcccggatc
ctgccctttctgtccacggagcaagcggctgacatactcatggcaacagccagaaacctg
cccttcctgatcaagaaggatgctcaggatgaggtgctgctgtgcctgttgaggccattc
tctctcattctctatcatcttccgacggggacggtcaccagccttctgcagcagctagcg
aacctacctcagagcgccacggcgccagcacctgccaacctgcacctcgcagctgtgctc
cagaacaagtttggcctgtccctgctgtacttggtcctgagtcgtggggaggaattgcag
aattccaatgctgctacggagctaatgcaggacaaccagtggacggagctgatgttcatg
gcaactcgagagcttctgcggatccctgaagcagcactggcaaagccagtatccaccccc
tctaacctgctgtcccttttttctcgctatgttgatcagcagaagctgaatgtgctggag
acaaagttgcagttagtgcaggggatacgatag
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