Dermochelys coriacea (leatherback sea turtle): 119858780
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Entry
119858780 CDS
T09064
Symbol
HMGB1
Name
(RefSeq) high mobility group protein B1 isoform X2
KO
K10802
high mobility group protein B1
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc03410
Base excision repair
dcc04140
Autophagy - animal
dcc04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
119858780 (HMGB1)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
119858780 (HMGB1)
09143 Cell growth and death
04217 Necroptosis
119858780 (HMGB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcc03036
]
119858780 (HMGB1)
03400 DNA repair and recombination proteins [BR:
dcc03400
]
119858780 (HMGB1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dcc04147
]
119858780 (HMGB1)
Chromosome and associated proteins [BR:
dcc03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
119858780 (HMGB1)
DNA repair and recombination proteins [BR:
dcc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
119858780 (HMGB1)
MMR (mismatch excision repair)
Other MMR factors
119858780 (HMGB1)
Exosome [BR:
dcc04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
119858780 (HMGB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
NOA36
HMG_box_5
Nop14
Motif
Other DBs
NCBI-GeneID:
119858780
NCBI-ProteinID:
XP_038266102
LinkDB
All DBs
Position
1:complement(46868048..46876992)
Genome browser
AA seq
215 aa
AA seq
DB search
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSVKEKGKF
EDMAKADKVRYEREMKNYIPPKGETKKKFKDPNAPKRPPSAFFLFCAEFRPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDVGKKVVAKAEK
SKKKKEEEEDEDEDEDDEEDEDDDEDDDEDDDDDE
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaggtgatcctaagaagccaagaggtaaaatgtcttcatatgccttctttgtg
caaacttgccgggaggagcacaagaagaagcacccagatgcttcagtgaacttttcagag
ttctcaaaaaaatgttcagaacggtggaagactatgtctgttaaggaaaaaggaaagttt
gaagatatggcgaaggctgacaaggttcgttatgaaagagaaatgaaaaattatatacca
cccaaaggggaaacaaaaaagaagttcaaggatcctaatgcaccgaagaggcctccttca
gcttttttcttattctgcgctgaatttcgtccaaaaatcaaaggagaacatcctggtctg
tccattggagatgttgcaaagaaactgggagagatgtggaataacactgctgcagatgat
aaacagccctatgaaaagaaggctgctaaactgaaggagaagtatgaaaaggatattgct
gcataccgggctaaagggaagcctgatgtaggaaaaaaggtggttgccaaagctgagaag
agcaagaaaaagaaggaggaggaggaggatgaagatgaggatgaggatgacgaggaggat
gaagatgatgatgaggatgacgacgaggatgacgatgatgatgaataa
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