Dermochelys coriacea (leatherback sea turtle): 119858937
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Entry
119858937 CDS
T09064
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dcc03009
]
119858937 (PDCD11)
Ribosome biogenesis [BR:
dcc03009
]
Eukaryotic type
90S particles
Other 90S particles
119858937 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_PDCD11
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
Suf
Spt6_S1
OB_RRP5_4th
HAT_PRP39_C
TPR_14
OB_RRP5
HAT_Syf1_CNRKL1_C
PRP6_TPR
TPR_19
DUF8501
CFAP70_mid_TPR
CFAP70_TPR_C
TPR_YpiA_C
ARM_TT21
ARM_TT21_5th
HAT_Syf1_M
Motif
Other DBs
NCBI-GeneID:
119858937
NCBI-ProteinID:
XP_038266428
LinkDB
All DBs
Position
7:complement(122373005..122418126)
Genome browser
AA seq
1828 aa
AA seq
DB search
MTSMEENFPRGGTQKKPSEGKAPRRPIEQDNLFDTHHEEGSQKRKRLQEDQGKQKKIKAE
KKEVIKANAKDFELLTVEALSEGMLLLGCVKESNDFELVVSLPNGLTGFVQVTHICDAYS
KMLNEQVATEELLEDLNSLSDLYPPGMLIRCTVTSVGKTMDGHQSVKLSINPKDVNKALN
TTALRSGMLLSGLISSVEDHGYLIDIGVSGAKAFLPRQKSQSCIKSANKGAELKIGQYLN
CLIEEVKNNGRIVRLSISRSAVAAAIATEEQNWTLSNLLPGLVVKAQVQKVTPYGITLSF
LSSFTGIVDFMHLDPKKVGSYSQSQTMKACILSVHPTSKAVRLTLRQVFLQPGSMLGQLA
SSRIGMVVEEAAVKSFHAKTGAIFELDDGTLAFARLKHLSDTKKSFKPGAFKTGSKHRCR
IIDYSLMDELALLSLKHRIIAAPFLRYQDICPGHVVEGKVLALKPLGMQVKVTDHIRGLV
PHLHLADVLLKQPEKKYSVGGEVKCRVLISNPEEKKLILTLKKTLVTSKFPVLTSYEAAK
PGLIAHGFIVCAREFGCIVKFYNDVKGLVPKNELSSEPIPSPEKVFYKGQVVKVIVLKCE
PEQEKLLLSFKLMSRPVSEDGGEQIPKKNRKVTYETGQMVDVKVLKKKDNGLEVSILSDN
VSAHLPMMHLSDHVVNCKLLYHWLQEGDILHRVMCLSDKGGHITLCRKPAVISAVQEEQV
VRSFSEIQPGMQLAGYVRNIMSYGVFVEFPFGLAGLAPKAAMSDKFVTDTKDHFVVGQTV
VANVISMDEEKQRILLCLKLSEVGSEDPVAESFSLLSQCFEELKEVRGIMSRRNHSKVAQ
NLCGLIPGQKLELVVQEVQGDGSAFFNGSCVAGLTVTATRYHVGDKCLVAGQKARVLVLH
VDALKSAVHVSLREELLHPKAKRLMENSQHPAVVQHVAEESAIASLVETGQLTAIPVASH
FNDTFRFDSEKLKVGQAVSVTLKTVVTGDHGVLLAVQGPAKKRTFIRSQKESETVEEGLA
AVKHSLCLGDMVKGTVKSVRPTYVTVAIDDKLTGSIHTSQILDEVPIGTFPTSRLKAGQK
VTARVIGGRDVKTHRYLPITHPHFTQSIPELSIRPSDLKGDGDTALSPEGDNPSERLRPY
KAGQTVTCFVKKYNTIKTWLEVEITPEIRGRVPQLLLSLNPKVLKHPEKSFKNGQALSAK
VTGTDASETNLCLSLTGVHSLAEGTVTLGTITKVTPHVCLTIALPFGKTGKASIFHLSDS
YAEQPLENFSIGKLVRCCVLSNEDNKIEISLRQSRTNPKSKNKVEDPEITCVEDVREGQL
VRGYVKSVKQSGVFCSLSSSVVGRVQFHKVVPFFIPKQSLYEQYMPEGKFLIAKVLSVNN
RESHVELSLLPEDTGKPSILPESLGLPHCDTDEGKEKREEFKKLKAKRKRRVSEGEQEVK
PGKKRSHLMDGDDSGIEVYCREEEEEEDEENKRKSKQETKRAEAPRLQVSSGFTWDESLN
ALEMPVSNRKEESSDSEEEDDTQSMRKKQTKKEQEQEKQRVEKELSKIEAALMDPSRQPQ
TADDFDRLVLSNPSSSILWLQYMAFHLQATELEKARAVAERALKTISFREEQEKLNVWVA
LLNLENMYGTEETLMKVFERAVQYNEPLKVFQHLADIYASSEKYQQADDLYNTMLKRFRQ
EKSMWLKYATFLLKRGQVEATHRLLERALKGLPDKEHVDVISKFAQLEFHFGDPEHAKAI
FESTLSSYPKRTDIWSIYIDMMIKHGSQKEVRDIFERVIHLSLAAKRMKFFFKRYLDYEK
KCGTSETIQAVKVAALEYVESKSSLAES
NT seq
5487 nt
NT seq
+upstream
nt +downstream
nt
atgacatccatggaagaaaacttccctcgaggtggcacccagaaaaaaccttcagaggga
aaagcacccaggcgaccaatagagcaggataacttatttgatactcatcatgaagaagga
tcccagaaaaggaagagactccaagaagatcaaggaaagcagaaaaagatcaaggcagag
aaaaaggaagtcattaaagctaatgccaaggattttgaacttctcacagttgaggccctg
agtgaggggatgctgctactcggctgcgtgaaggagtctaacgacttcgagttagtggtc
agtttgcctaatggactcactggatttgtgcaagtgacgcacatttgcgatgcctacagc
aaaatgctgaatgagcaagtggccacggaagagctcctggaggatttgaactcgctatca
gacctgtacccccctggaatgctgatcagatgcaccgtgaccagtgtggggaaaaccatg
gatggacaccagagtgtcaagctgtcaattaaccccaaagatgtcaacaaggctctgaac
accacagctcttagatctggcatgttgctctctggcttgatatctagtgtggaagatcac
ggctacctcatagatattggagtcagtggtgctaaagcatttctgcctcgtcagaagtcc
cagagttgcatcaaatcagccaacaaaggggctgagctgaaaataggccagtacctgaac
tgtctcattgaagaagtgaaaaacaacggaagaattgtccgtctgtccatcagtcggtcg
gcggttgctgcggccattgcaacagaagaacagaactggacgctcagtaacttactgcca
ggactggtggtgaaagcccaggtgcagaaggtgaccccatatggcatcactctgagtttc
ctctcctccttcactgggattgtggacttcatgcacctggatccgaagaaagtggggagt
tattcacaaagtcagacgatgaaggcctgcatcctctctgttcatcccacctccaaagca
gtacggctcacgctgcggcaggtcttccttcagcctggcagcatgctaggccagctcgcc
agcagtcggattggcatggtggtggaagaggcagcggtgaagagcttccacgcaaagacg
ggcgccatctttgaactagacgacggcactctggcttttgcacgtctgaagcatctttca
gacaccaaaaaatccttcaaacccggggcgtttaagacgggaagcaagcacagatgtcga
atcattgactacagccttatggatgagctggccctgttgtctttgaaacatcgaattatt
gctgctccgtttctgagataccaagacatctgtcccgggcacgtggtggagggcaaagtg
ttggctctgaaacccttggggatgcaggtgaaggtgacagatcacatcagggggctggtg
cctcacctacacctggcggacgtgctcctgaaacagcccgagaagaagtacagtgtgggc
ggtgaagtcaagtgccgggtgttaatatccaatcctgaagaaaagaagctgatcctaact
ctgaagaaaactctggtcacatcgaaatttccagtcctcactagttacgaggctgcaaag
cccggcctgatcgctcacggcttcattgtgtgcgctagggagtttggctgcattgtgaag
ttctacaatgacgttaaaggtctggttcccaagaacgagctgagctcagagcccatacct
tccccagagaaagtcttctacaaaggccaggttgtcaaagtcatagtcttaaaatgtgag
cctgagcaggagaagctgctgctgtcattcaagttgatgagcagacctgtctctgaggat
ggaggagaacaaattccaaagaagaatcggaaagtgacttacgaaactgggcagatggtt
gatgtgaaagtcctgaagaagaaagataatggcctggaggtttccatcttgtcggacaat
gtttccgcccaccttcccatgatgcacctgtctgaccatgtggttaactgtaaactcctg
taccattggctccaagagggtgacatcctccacagggttatgtgcctaagtgacaaggga
ggacacattaccctgtgcagaaagcctgcagtgatctctgctgtacaagaggagcaagtg
gtgaggagcttctctgaaatccaacctgggatgcagctggctggttatgtgaggaacatt
atgtcctatggagtgtttgtggagttcccatttggtctagctggactggcccccaaagcg
gccatgagtgacaagtttgtgacggacaccaaagaccattttgtggtgggacagacggtg
gttgccaacgtgataagcatggacgaggagaagcagcgtatcctcttgtgtctgaagctg
tctgaggttggctcggaagaccccgtcgctgagagcttctccttactgagccagtgcttt
gaggaactgaaggaggtcaggggcattatgagcagaagaaatcattccaaggtggcccaa
aacctctgtggattgatacctgggcagaaacttgagctggtcgttcaggaagtgcagggg
gatggctcagcattcttcaacggcagctgtgttgctgggctgactgtaacagccactcgc
tatcatgttggagacaagtgcttggtcgctggtcaaaaagcaagagtcttggttcttcat
gttgatgccctcaaatccgcggttcatgtctcccttcgagaagagctgttgcacccaaaa
gccaaacggttaatggaaaactcccagcaccctgctgtcgtgcagcatgtagcagaagag
tctgccattgcctcgttggtggagacaggtcagctgactgccattcctgtggcctctcac
ttcaatgacacgttccgttttgactctgagaagctgaaggttggacaggctgtctctgta
accttaaaaaccgtggtgacgggtgaccatggcgtcctgttagcagtgcaaggcccagca
aagaaaaggacttttataaggtcccagaaagagtcggagacagtagaggagggcttggct
gcagtgaaacactccctgtgcttaggagacatggtcaagggaactgtgaagtccgtcaga
cctacctacgtgacagttgccattgatgataagctaacgggctccatccacacgtcccag
atcttggatgaagtccccataggcacctttccaacatccaggctgaaagctgggcagaag
gtgacagcccgggtcattggaggccgagatgtgaagactcacaggtatttgcccatcacc
catccacacttcactcagtccattccagagctcagcattcgacccagtgatctgaagggg
gatggtgacacagctctgagccccgaaggagacaatcccagtgaacggctcaggccctac
aaagctgggcagacagtgacctgctttgtgaagaagtataacaccatcaagacttggctg
gaggtggagatcacccctgagattcgaggaagagttccccagctgctgctttcccttaac
cccaaggtcttaaagcatccagaaaagagcttcaagaatggccaagctttgtctgcaaaa
gtgactggcacagatgcctctgagaccaacctctgcctgtcacttacaggagtccactcg
ctggcagaaggaaccgtcaccctgggcaccataacaaaggtgactccacacgtctgcctc
accattgcacttcccttcggaaagaccggcaaagccagtatctttcacctgagtgattcg
tacgctgagcagccgctagagaacttcagcatcgggaagctcgtcaggtgttgtgtccta
tccaatgaagacaataaaatagaaatatctctccggcaatccaggacaaatccaaagagc
aaaaacaaagtggaagatcctgaaattacgtgtgttgaggatgttcgggaaggccagctg
gtcagaggctatgtcaaatccgtcaagcagtcgggtgtgttctgtagtttgtctagctca
gttgtgggccgagtccaattccacaaagtcgtccccttcttcataccaaaacaatctttg
tatgagcagtacatgccggaggggaagttcctcattgccaaggtcctcagtgtaaataat
agagagagccatgttgagctctctctcctccctgaggacactgggaagccaagcatcctg
cctgagtcactgggcctgccacactgtgacacagacgaggggaaggagaagagagaggag
ttcaagaagctgaaggcaaaacggaaaagaagagtctcggaaggcgaacaggaggtgaag
ccagggaaaaagcgaagtcacctgatggatggggatgacagcggcattgaggtctattgc
cgggaggaggaggaggaggaagatgaggagaataaaaggaaatccaagcaggagacaaaa
cgtgcagaggctccaaggctgcaggtttctagtggtttcacttgggacgagagtttaaat
gccctggagatgccagtatcgaatcggaaagaggagagctcagacagcgaggaagaggat
gacacacagtccatgaggaagaagcagacgaagaaggagcaggagcaggagaagcagagg
gtggagaaggagctctccaagatcgaagccgccctgatggaccccagtcggcagccccag
acggcagacgactttgaccgcctggtgctgagcaatcccagcagttccatcctgtggctg
cagtacatggccttccaccttcaagccacggagctggagaaggccagggcggtggcggaa
agggccctcaaaaccatttccttcagggaggagcaggagaagctgaacgtgtgggtagct
ctgctgaacctagagaacatgtatggcacggaagagacactgatgaaggtctttgagagg
gctgttcaatacaacgagcccctgaaagtcttccagcacctggctgacatctatgccagc
tctgagaaataccagcaagctgatgacctgtacaacacaatgctgaagcgtttccgccag
gagaaatcaatgtggttgaaatacgccaccttcctcctgaaacggggccaggtggaggct
acacacaggcttctggaacgtgccctgaagggcctgccagataaagaacatgtggatgtg
atttccaagtttgctcagctggagttccactttggggaccccgaacatgccaaggccatt
tttgagagcacactcagcagctacccaaaacgcacggacatctggtccatctacatagac
atgatgatcaaacacggcagccagaaggaagtacgggatattttcgagcgggtaattcac
ctgagcctggcagcaaagaggatgaagtttttcttcaagcgctacctggattacgagaag
aaatgcggcacgtcggaaaccatccaggctgtgaaagtagcggcactggagtacgttgag
tccaagagctctcttgccgagagctaa
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