Dermochelys coriacea (leatherback sea turtle): 119859347
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Entry
119859347 CDS
T09064
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dcc04121
]
119859347 (PDZRN3)
Enzymes [BR:
dcc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119859347 (PDZRN3)
Ubiquitin system [BR:
dcc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
119859347 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
Sina_ZnF
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_5
zf-TRAF
PDZ_Tricorn
RING_XB3-XBAT31
TRAF3_RING
Prok-RING_4
U-box
zf-RING_6
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
119859347
NCBI-ProteinID:
XP_038267284
LinkDB
All DBs
Position
7:complement(11536561..11739971)
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AA seq
1060 aa
AA seq
DB search
MGFELDRFSGEVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPAQCQPIA
TKELNHVLPLKSLILKLDIKCEHRARGCGQVVKLQQLGAHAERCDYAPARCRHPGCGAVL
NRRDVDAHMRESCEARPAGVCERGCGLGLTHREQRAGGHGCLEALQGRNRCLQAKVGGLE
KELKKEALRAGKREKSLLAQLSAVQLELQMTALRYQKKFTAYSARLDSLSRSLAAPPCQG
EETKALTLVLHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFISKIIDSGPAAKEGGLQIHD
RIIEVNGKDLSKATHDQAVEAFKTAKEPIVVQVLRRTPRAKIFSPSHESHLVDMGTQTDI
TFEHIMALTKMGSPPPPVSVLDPYLLPEDHSSVHEYYDPNDYMGSIHQEMDRDELELEEV
DLHRVNSQDKLGLTVCYRTDDEDDIGIYVSEIDPNSIAAKDGRLREGDRIIQINGIEVQN
REEAVALLTSEENKNVSLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTA
SMLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDESTRNDESSEQENNADDHTTSSNTL
GSQKKLVYSHDTLGSGDMQFSNESFISADCTDTDFLSIPVDECERFRELLELKCQVKSAN
PYSLYYHNSALDISKSDHESVDRELEMLNEELRNIELECLNIVRAHKMQQLKDQYREPWM
LHNSGFRNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLQISPDNSLH
RTAEGSSCQGNEGAVAYNVSQKNLLPSSESHESSSAKYLSSPKDADLGKQLESKERKASD
GSKSPAQKLAGSYISPYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMC
KDFNSSSQSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERAIKIKEERSGMTTDDDAISE
MKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLDCLKEQQGAEEKKEMNIIELSHKKMM
KKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atggggttcgagctggaccgcttcagcggggaggtggatcccgacttcaagtgcaacctg
tgcaacaaagtcctggaggacccgctgaccaccccgtgcggccatgtgttctgcgcgggc
tgcgtgctgccctgggtggtgcagcaggggagctgcccggcgcagtgccagcccatcgcc
accaaggagctcaaccacgtcctgccgctcaagagcctcatcctcaagctggacatcaag
tgcgagcaccgcgcccggggctgcgggcaggtggtgaagctgcagcagctgggcgcccac
gccgagcgctgcgactacgcgccggcccgctgccgccacccgggctgcggcgcggtgctg
aaccggcgcgacgtggacgcccacatgcgggagagctgcgaggccaggccggcgggcgtc
tgcgagcggggctgcggcttggggctgacccaccgggagcaacgcgccggcggccacggc
tgcctggaagccctccagggccgcaaccgctgcctgcaggcgaaggtcggcgggctggag
aaggagctgaagaaggaggcgctgcgggccggcaagcgggagaagtcgctgctggcccag
ctctcggccgtgcagctggagctgcagatgacggcgctgcgctaccagaagaagttcacc
gcctacagcgcccgcctcgactcgctcagccgcagcctggccgcgccgccctgccagggt
gaagagactaaagcactgactcttgtccttcatcgtgactctggctctcttggatttaat
attattggtggccggccatgtgtggacaatcaagatggctcatctagtgaaggaattttc
atatcaaaaataattgacagtgggcctgctgctaaagaaggagggctacagattcacgac
aggattattgaggtaaatggaaaagatttatcgaaagcaacacatgaccaggcagtggaa
gcattcaaaacagccaaagagcccatcgttgtacaggtcctgaggagaaccccacgcgct
aagatcttcagtccttctcatgagtctcatctggtagatatgggcacccagaccgatata
acctttgaacacatcatggctctaaccaagatgggatcccctcctccaccagtctcagta
ctagatccatacctcttacctgaggatcattcgtcggtgcatgaatactatgacccaaat
gactacatgggaagcattcatcaagaaatggacagagacgagttagaattagaggaagta
gacttgcatagagtgaacagccaggacaagctcggccttactgtgtgttatcgaactgat
gacgaggatgacattggtatttatgttagcgagattgatcccaacagcattgctgcaaaa
gatggtcgcctgcgggagggagatcgcattattcaaattaatggcatagaggtacagaac
agagaagaagctgtggcacttctaaccagtgaagaaaacaagaatgtctccttacttgta
gcaagaccagaaatccagctggatgaaggatggatggatgatgacagaaatgattttctg
gatgacttacacatggacatgctagaggaacagcaccaccaggcaatgcagtttactgcc
agcatgcttcagcagaagaagcacgaagaagatggaggcaccacagatactgccactatc
ttatctaaccagcacgagaaggacagtggtgtgggacgcacagatgagagcacacgaaat
gatgaaagctcagagcaggagaataatgccgatgatcacaccacttcctctaacacttta
ggaagccagaagaagctggtgtacagtcatgacactctaggaagtggtgacatgcagttc
agcaacgagtcatttatctcagccgactgcacagacacagacttcctcagcatcccagtg
gatgaatgtgagagattccgcgaactactggagctgaagtgccaagtcaagtctgccaac
ccatacagtctgtattatcataacagtgccctggatataagtaagagtgaccacgaaagc
gttgacagggagctggagatgctgaacgaggaactgcggaatattgagctagagtgtctg
aatattgtgagagctcataaaatgcaacagctaaaggatcaataccgggagccctggatg
ctccataacagcggattccgtaactacaacacaagcatcgatgcgcgcaggcacgagctc
tcagacattacagagctccctgagaaatctgacaaggatagctcgagtgcgtataataca
ggcgagagctgtcgaagcacaccgctcacgctgcagatttcccctgacaattcactgcat
agaactgcagaaggcagcagttgtcaaggtaatgagggggcagtggcatacaatgtctcc
cagaagaatttgctacctagctcagaaagtcacgaatccagctctgctaaatatctctca
tcacctaaagatgcggaccttggcaagcagctggaaagcaaagagagaaaagctagtgat
ggaagcaaaagcccagctcaaaaactggctggctcctacatctctccatatcatcactct
ccctataaacacgctcatatccctgcccacgctcagcactatcagagctacatgcagcta
atacaacagaaatcagctgtggaatatgcacagagccaaatgagcctagtgagcatgtgc
aaagactttaattcttcaagccagagtgaacccaggatggaatggaaagtcaaggtcagg
agtgatggaacccgctacatcacaaagaggccagtcagggacaggctgctgagagaacgt
gccataaagattaaggaagagcgcagtggtatgacgacagatgacgacgctataagcgag
atgaagatgggccgctactggagcaaggaggaacggaagcagcatttggtgaaagcgaag
gagcagaggcggcgacgtgagtttatgatgcagagcaggttagattgtttaaaggaacag
caaggtgcagaagaaaagaaagagatgaacatcattgaactgagccacaaaaaaatgatg
aagaagaggaataaaaaaatctttgataattggatgacaatccaagaactcttaacccat
ggcacaaagtcccccgatggcacaagagtgtacaattccttcctgtcagtgactactgta
taa
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