Dermochelys coriacea (leatherback sea turtle): 119860631
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Entry
119860631 CDS
T09064
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119860631 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dcc00536
]
119860631 (COL11A1)
Glycosaminoglycan binding proteins [BR:
dcc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119860631 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
119860631
NCBI-ProteinID:
XP_038270535
LinkDB
All DBs
Position
8:69342207..69582705
Genome browser
AA seq
1815 aa
AA seq
DB search
MEMQRCSTRWKTKRWLRDSTVTTLIAFTFLLQAAEVRGAEPVDVLKALEFHKSPEGISRT
AGFCTNRRDSKGSDVAYRVSKHAQLSAPTKQLYPGGNFPEDFSVLITVKPKKGIQSFLFS
VYNEQGIQQLGVEVGRSPVFLFEDQYGKPAPEDYPLFRTVNIADGKWYRVAISVEKKSVT
MIVDCKKKTTKPLDRSDRAIVDTKGIVVFGTRILDEEVFEGDIQQLLIVPDPRAAYDYCE
HYSPDCDSPVPNAPQAQEPQVDEYATEDLIEYDYEYGEADYKETDTVTEGTPLFKETIAQ
TEANIVDEFQEEYSVTETDYGISESSQTAAPRQTTEANEHNPVEDIFAEEYLTGEDYDSE
HKKTEDTEYGSRGVDLSESDLLVDGELGEYDFYEYKEYEEKPTNPTNEEFGPGVPAETDI
TETSVTGHGAYGEKGQKGEPAVVEPGMLVEGPAGPAGPPGLTGPPGLQGPTGPPGDPGER
GPSGRPGLPGADGLPGPPGTMLMLPFRFGGDGEKGPTISAQEAQAQAILQQARIAMRGPP
GPMGLTGRPGPVGGPGSPGIKGESGDPGPQGPRGIQGSIGPSGKPGKRGRPGADGARGMP
GEPGSKGDRGFDGLPGLPGDKGHRGDRGPQGPPGAPGEDGTRGEDGEVGPRGLPGEAGQR
GLLGPRGTPGPPGQPGVAGVDGPPGPKGNLGPQGEPGPPGQQGIPGPQGLPGPQGPIGAP
GEKGPQGKPGLPGLAGSDGPSGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVR
GLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGPLGPRGEDGPEGPKGRAGPTGDPGGAGQA
GEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGLHGKPGPRGQRGPTGPRGSR
GPRGPTGKPGPKGTAGSDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQR
GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP
GPQGISGKDGPPGLRGFPGERGLPGAQGPAGLKGGEGPQGPPGPVGSPGERGSAGTAGPI
GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPGGSPGEDGDKGEI
GEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGPRGFP
GPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGV
GDKGEPGEAGNPGPPGESGPGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV
GFPGDPGPPGEPGPGGQDGTGGEKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAE
GRQGEKGAKGEPGSEGAPGKTGPVGPQGLSGKPGPEGLRGIPGPVGEQGLPGAPGQDGPP
GPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGALGAKGDTGIP
GPAGPLGPPGPPGLPGPQGPKGSKGSTGPGGQKGDGGLPGPPGPPGPPGEVIQPLPIQSP
KKTRRSSDYMLADAADNILDYSDGMEEIFGSLNSLKQDIEHMKYPMGTQNNPARTCKDLQ
LCHPDFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKENPGAW
FSEFKRGKLLSYVDVEGNSINMVQMTFLKLLSASARQNFTYNCHQSVAWHDVSSDSYDKA
LRFLGSNDEEMSYDNNPYIKALHDGCASRKGYAKTVIEISTPKIDQVPIVDVMINDFGDQ
NQKFGFEVGPVCFLG
NT seq
5448 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcagagatgctccacaagatggaaaacgaaaaggtggctccgggactccact
gtaaccacactcatcgcttttactttccttctccaggctgcagaggtcagaggagctgaa
ccagttgatgtgctaaaagcattagaatttcacaagtcaccagaaggaatatcaagaaca
gcaggattttgcacaaacagaagggattcaaaaggatcagatgttgcctacagagtttca
aaacatgcacaactcagtgccccaacaaagcaactgtacccaggtggaaactttcctgaa
gacttttcagtattaattacagtaaaacctaaaaaggggatccagtccttccttttctct
gtctacaatgaacagggtattcagcaactaggtgtggaagttggtagatcccctgtcttc
ctgtttgaagatcagtatggaaaacctgccccagaagattatcctctttttaggacagtc
aacattgctgatggaaagtggtatcgagtagctatcagcgtggagaagaaaagtgttacc
atgattgttgactgtaaaaagaaaactacaaaaccactcgacaggagtgaccgagcaatt
gttgataccaaaggcatcgtggtctttggaaccagaattctggatgaagaagtttttgag
ggtgatatccagcaactattgattgtacctgatcccagagcagcgtatgattattgtgag
cattatagcccagactgtgattcccctgtgcccaatgctcctcaagctcaagaacctcaa
gttgatgagtacgcaactgaagatttaatcgaatatgactatgagtatggggaagcagat
tataaagagactgacactgtaacagaggggaccccactattcaaggagacaattgcacaa
acagaggccaatattgttgatgaatttcaagaagagtatagcgtgactgaaactgactat
gggatttcagagagttcccagactgcggctcccaggcaaacaactgaagctaatgagcat
aatcctgttgaagacatatttgctgaagaatacctaactggagaggattatgattcagaa
cataaaaaaactgaggatactgaatatggaagcagaggagtagacctcagtgaatctgat
cttctggtagatggagaattaggcgaatatgatttttatgaatataaagaatatgaagag
aaaccaacaaatcccactaacgaggaatttggtcctggtgttccagcagagactgatatc
acggaaacaagtgtgactgggcatggtgcttatggagaaaaaggacagaagggagaacca
gctgtggttgaacctgggatgcttgttgaaggaccagcaggaccagcaggacctccaggt
cttacaggtcccccaggtttacagggtcccactggtcctcctggtgaccctggtgagagg
ggcccatcagggcgtcctggccttccaggtgctgatggtttacctggtcccccaggtacc
atgttaatgttgccgttccgctttggtggagatggtgagaagggcccaacaatctcagct
caagaagctcaagcccaagctattcttcagcaggcaaggattgctatgagagggccacca
ggccccatgggactcactggaagaccaggtcctgtgggcgggcctggctcaccaggtatt
aaaggagaaagcggcgacccaggtccccagggtcctcgaggtattcaaggttccattggt
ccaagtgggaaacctggcaaaagaggtcgtccaggagctgatggtgctagaggaatgcca
ggagaacctggttcaaagggtgatagagggtttgatggtcttcctggtctacctggtgat
aaaggtcacaggggagatcgtggcccacaaggacctcctggtgcacccggtgaagatgga
acaagaggagaagatggagaggttggacccagaggtctcccaggtgaagctggtcaaaga
ggactactgggacccaggggcacacccggtcccccaggacaacctggcgttgcaggtgtt
gatggccccccaggtccaaaaggaaacttgggtcctcaaggggaaccaggacctcctggt
caacaaggaatcccaggtccacaagggcttcctggtccacaaggtcctattggagctcct
ggtgaaaaaggaccacagggcaaacctggccttcccggacttgctggttctgatgggcct
tctggtcatcctggcaaagaaggtcagtctggagaaaaaggtgctttggggcctccaggt
cctcagggtccaattggctatcctggtcctcgtggtgtgaagggagctgatggtgtccgt
ggtctcaagggctccaaaggtgaaaagggtgaagatggtttcccaggatttaaaggtgac
atgggtcttaaaggtgacagaggtgaagttggtccactgggtccaagaggagaagatggc
cctgaaggtccaaaaggtcgagcaggtccaacaggggacccaggtggtgctgggcaggct
ggtgaaaagggtaaacttggggttccaggactgccaggatatccaggaagacaaggtcca
aagggctccactggttttccaggattcccaggtgccaatggagagaaaggtgcaaggggt
ttacatggcaaaccaggtcccaggggacagcgagggccaacgggtccccggggatcaaga
ggcccacgaggtcccacaggaaaaccaggccctaagggcactgcaggcagtgatggccct
cccggcccaccaggtgaaaggggaccacaagggccgcaaggacctgttggattccctgga
ccaaagggacctcctgggccacctggaaaagatggcttgccagggcacccaggacagcgg
ggtgagactggttttcaaggcaaaactggacccccaggccctggtggtgttgttggaccc
cagggtcctacaggtgagactggcccaattggtgaaagaggtcaccctggtcctccaggc
ccaccaggtgaacaaggcctcccaggagctgcaggaaaagaaggtgctaagggtgatcca
ggccctcaaggtatctctggaaaagatggaccgccaggtcttcgtggtttcccaggagaa
agaggccttccaggagctcagggtccagctggtctgaaaggaggagaaggcccacaaggc
ccacctggaccagttggttctccaggtgaacgtggatcagcaggtactgctggccccatt
ggtctaccaggccgtccaggtcctcaaggtcctccaggcccagcaggagagaagggtgct
cctggtgaaaaaggtcctcaaggtccagctggacgagatggagtacagggtcctgtaggt
cttccaggtcctgctggtcctggtggctctcccggagaagatggtgacaagggtgaaatt
ggtgaaccaggtcagaaaggcagtaaaggtgacaagggagaaaatggtcctccgggtcca
ccaggtcttcaaggtcctgttggtgcccctggtatagctggaggtgatggagagccaggc
ccaagaggtcaacaaggaatgtttgggcagaaaggtgatgaaggtccacgaggattccct
ggtcctccaggccccattggtcttcagggtctgcctggccctccgggtgaaaagggtgag
aacggtgatgttggtccaatgggtccgcctggtcctccaggtccaagaggtccccagggt
cctaatggagctgatggtcctcaaggtcccccaggctctattggctctgttggaggtgtt
ggtgacaagggtgagcctggggaagctggtaaccctggacctcctggagaatctggccca
ggcggaccaaaaggtgaaaggggagaaaaaggtgaggctggtccacctggggctgctgga
cctccaggtgctaaaggacctccaggtgatgatgggcctaagggtaatccaggccctgtt
ggtttccccggagatcctggtccccctggtgaacctggccctggtggtcaagatggtact
ggtggggagaagggagaagatggtgatcctggtcaacctggtccaccaggtccttcaggg
gaagctggcccacctggtccccctgggaagagaggcccccctggagcagctggtgctgag
ggcagacaaggtgaaaaaggtgcaaagggtgaacctggttcagaaggtgcacctggtaaa
acaggaccagttggtcctcagggactttcaggaaaacctggtccagagggtctccgtggt
attcctggccctgtgggagaacaaggactacctggagcaccaggtcaggatggaccacct
ggtcctatgggtccacctggcttgcctggactgaagggggatcctggttccaagggtgag
aagggacatcccggtctgattggtctgattggacctccaggagaacagggtgaaaagggt
gacaggggtcttccaggtccacaaggagctctcggagccaagggcgatacaggcattccc
ggtcccgctggtccacttggtccccctggccctcctggtttaccaggtcctcaaggtcca
aagggttccaaaggatccactggtcctggtggtcaaaagggtgatggtggtttacctggc
cccccaggtcctcccggtcctcccggggaagttatccagcctttgccaatccagtcaccc
aaaaagacaagaagatcttcagattacatgctggctgatgcagctgataacatcctggat
tattctgatggcatggaggaaatatttggttcactcaattctctaaagcaagatattgag
catatgaagtatccaatgggcactcagaacaacccagcccgaacttgcaaagatctacaa
ctctgccacccagacttcccagatggtgaatattggattgatcctaatcagggctgctct
ggagactccttcaaagtgtactgtaatttcacagcgggtggcgaaacttgcatctatcca
gataagaaatctgaaggagtaagaatttcatcatggccaaaggagaatccaggagcctgg
tttagtgaatttaagagaggcaaattgctttcctatgtggatgttgaaggcaattccatt
aatatggttcaaatgacattccttaaactactgagtgcctctgccagacaaaatttcact
tacaactgtcatcagtcagtagcttggcatgatgtgtcatctgacagctatgacaaagca
ctgagattcttaggatcaaatgatgaagagatgtcttatgacaataatccttacatcaaa
gctcttcatgatggttgtgcatcaagaaaagggtatgcaaaaactgtgatcgaaatcagt
acacctaaaatagaccaagtgcctattgttgatgtgatgattaatgactttggtgatcag
aaccagaagtttggatttgaagttggtcccgtctgcttcctcggttaa
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