Dermochelys coriacea (leatherback sea turtle): 119861123
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Entry
119861123 CDS
T09064
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc04510
Focal adhesion
dcc04512
ECM-receptor interaction
dcc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119861123 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119861123 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119861123 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dcc04147
]
119861123 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
dcc00536
]
119861123 (COL4A5)
Exosome [BR:
dcc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119861123 (COL4A5)
Glycosaminoglycan binding proteins [BR:
dcc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119861123 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119861123
NCBI-ProteinID:
XP_038271623
LinkDB
All DBs
Position
9:complement(86513129..86661881)
Genome browser
AA seq
1691 aa
AA seq
DB search
MKRRGCRCRRLAAACLLLLLGLWGLSAEAAACHGCTSGSKCDCSGVKGEKGERGFPGLEG
QPGLPGFPGPEGPPGPRGIKGDDGLPGPTGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPG
LQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGLPGMKGDPGEIILSSLSGQKGDPGFPG
LPGLPGPPGPLGVQGPIGPPGPPGLTGPPGPTGLPGPKGNMGLNFQGPKGEKGDQGLQGP
PGPPGQIGEQKRPTDIEFQKGDQGIPGERGPPGPPGPQGPPGPSGGMKGEKGEQGEPGKR
GKPGKDGDPGQPGRDGLPGEPGLNGVPGRDGEKGLKGERGLPGPPGVITGNGVEVGPKGN
KGLPGFPGPKGERGYPGLQGPPGLSGPPGIAGVGPPGPPGLPGEQGQKGDQGLPGVSIPG
QPGLDGRPGPPGPPGAPGPPGTTIPPSDRVCQRGPPGFPGPPGDKGFMGEQGQKGDKGET
CFNCIGTGISGPPGDRGPPGPPGSPGSPGFPGPKGEKGLTGLTGLVGPSGFPGPPGAPGR
PGSKGDPGDSLAFPGLKGDKGDTGFPGPPGLPGIDGSPGQEGLPGLPGSKGEPGGVAFKG
GIGPPGDPGVSGLPGDRGPMGPPGFGPQGPTGEKGIQGVSGRPGPPGVPGPKGEPGETIT
ESGVPGSPGPPGRNGEVGLPGDPGLPGQPGLSGIPGPKGDPGIPGIGLPGPPGLKGFPGM
AGPPGAPGAPGRPGLEGPPGQSGFPGQKGDPGFGVPGPPGPPGPLGFKGAPGLKGDPGFP
GNPGFPGQSGSDGTPGPKGDPGASGPPGLEGPPGFPGIGGQGPPGQPGPPGPVGPPGPSG
LQGVPGEKGDPGPPGFDIPGPPGDRGSPGFPGTPGLIGPPGSPGPPGRDGISGFPGAKGE
MGVMGAPGPQGPPGTPGRNGLPGPKGSDGLPGQPGPSGLAGQKGTKGETGLPGPPGQVDP
SQLGSKGEKGEPGIPGISGVSGQKGYQGLPGDPGPPGFNGQPGAPGLSGPKGEPGLPGQS
GPAGPPGQKGAMGETGLPGVPGIKGFQGIAGRPGQPGPPGFPGLKGEKGNPGLSDIGIPG
PKGDTGFPGYPGNPGSKGTPGNPGLTGLPGNPGAKGEAGLPGFPGTPGIPGPKGIDGPPG
NPGLPGSPGPPGDVGRPGPPGLPGEKGQPGRDGIPGPAGQKGEPGQPGFGRPGPPGLPGL
SGQKGEMGLPGLPGAPGLTGLKGEPGFQGFPGLQGPQGPPGLPGPPMEGLKGSPGPQGVP
GRPGPSGPPGLPGPEGPRGPPGNGGFKGEKGNPGQPGQPGLPGLKGDQGPPGRQGDPGRP
GLNGMKGDPGVPGVPGFPGMKGPIGPPGAIGFKGDQGPSGPPGPPGLPGPSGQTIVVKGD
SGPPGPPGQPGLPGPSGLPGPPGLPGPIGLPGDPGRDGLPGFDGPGGRKGETGLPGQPGF
QGTQGPPGPDGLQGPPGPPGTASVAHGFLITRHSQTTDTPLCPQGTIRIYDGFSLLYVQG
NERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPKPMPMSMEPLTG
QSIQPFISRCAVCEAPAMVIAVHSQTIQIPSCPQGWDSLWIGYSFMMHTSAGAEGSGQAL
ASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEISEMFSKPQSETLKAGDLRTR
ISRCQVCMKRT
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggcggggctgccgctgccgccgcctggccgccgcctgcctgctgctgctgctg
gggctctgggggctgagcgcggaggctgcggcttgccatggatgtacatcaggatccaaa
tgtgactgtagtggagtaaaaggcgaaaagggcgagagggggttcccagggttagaaggt
cagcccggtttacctgggtttccgggaccagagggacctcctggcccaagaggcataaag
ggtgatgatggccttccagggcctactggacccaaagggatcagaggtcctccaggtctg
ccaggatttccaggaacaccaggacttcccgggttaccagggcaggatgggccaccagga
cttcaaggtatccccggatgcaatggaacaaagggggaacgtggattcccaggcagtcca
ggttttccaggtttacaaggtcctcctggacctcctggcctaccaggtatgaagggtgat
ccaggtgaaataattctgtcatcactgtcaggccagaaaggtgacccaggatttccagga
cttccagggttaccaggtccacctggtcccttgggcgtacaaggtcctattggtccccct
gggccaccaggtttaacgggacctcctggtccaacagggcttccagggcctaagggtaat
atgggtttgaacttccaaggacccaagggtgaaaaaggtgaccaaggccttcagggacct
ccagggccaccaggacaaattggggaacagaagagaccaactgacatagagtttcagaaa
ggagatcagggtattccaggagaacgaggtccaccaggaccccctgggccacaaggtcct
cctggtccttcaggtggcatgaaaggtgaaaaaggtgagcaaggagagccaggcaaaaga
gggaaacctggcaaagatggagatcctggccagcccggtagggatggtttacctggtgag
cctggtttaaatggtgttccaggaagagatggtgaaaagggtctgaaaggtgaacgtggt
ctgcctggtcctcctggagttatcacaggaaatggtgtagaagtgggaccaaaagggaat
aaaggacttccaggatttccaggacctaaaggcgagcgtggatatcctggcttgcaaggg
cctcctggcttgtcagggcctccagggattgcaggtgtaggcccccctggtccacctggt
ttgcctggggagcaaggacagaagggggatcaaggtctacccggagtttccatacctgga
cagcctggacttgatggacggccagggccacctggaccgccaggtgcccctggacctccc
ggaacaactatccctcctagtgacagagtatgtcagcgagggcccccgggttttccagga
cctccaggagacaaaggttttatgggagagcaaggccagaaaggtgataagggagagacg
tgctttaattgtataggaactggcatttctgggcctcctggggacaggggaccacccgga
cctccaggtagcccaggatctcctggtttcccgggaccgaaaggtgaaaaagggctaact
ggcttaactggactggtagggccatcaggatttccaggacctccaggtgcccctgggcgt
cctggttctaaaggggaccccggggacagcctggctttcccaggactgaaaggtgacaaa
ggggacaccggtttcccaggacctcctggtcttcctggcatagatggctctcctggacaa
gaaggactgccaggtcttcctggatccaagggggaacctggtggtgttgctttcaaagga
ggaataggacctccaggtgatccaggagtgtcaggtcttcctggagacagaggacctatg
gggcctcctggttttggcccacaaggtcctacaggtgaaaaaggcattcaaggtgtatcg
ggtcgcccagggcccccaggagttccaggtccaaaaggtgaacctggcgaaactattaca
gaatctggagttccaggctcacctggacctccaggaagaaatggtgaagtaggacttcca
ggtgatcctggtctgccaggtcagcctggcttgtcaggcatcccaggtcctaagggtgat
ccaggtatacctggcattggacttccaggcccaccaggcctaaaagggttcccaggaatg
gctggccccccaggagcaccaggagcccctggacgaccagggctcgaagggccaccagga
caatctggtttcccaggacaaaagggggaccctggatttggtgtcccaggaccacctggg
ccaccagggccactgggttttaaaggagctccgggactgaaaggtgatcctggcttccca
ggaaaccctggttttccagggcagtcaggttctgatggaactcctgggccaaaaggtgac
cctggagcaagcgggccacctgggttagagggacccccagggttcccaggaattggtggt
caaggtccacctggacaacctggccctccaggacctgtgggcccaccaggtccatcagga
ttacaaggagttccaggtgagaaaggagatcctggccctcctggatttgacatccctggt
ccacctggtgacagaggcagtccgggatttccaggaacacccggtctcattgggcctcca
ggttcaccaggaccaccaggacgagatggaatatcaggatttccaggtgccaaaggtgag
atgggtgtgatgggagctccaggtccacaaggccctccgggaactcctggcagaaatggc
cttcctggtcctaaaggcagtgatggtttaccaggtcagccaggaccttctggactggca
gggcagaaaggcaccaaaggtgaaacaggcctgccaggtccccctggacaagttgatcca
agccagctgggatcaaaaggagagaaaggcgagccaggcattccaggtatttctggagta
tcaggccagaaaggttatcaaggtcttccaggtgacccagggccacctggattcaatggg
caaccaggtgcaccaggattgtcaggccccaagggagagccagggcttcctgggcagtca
ggaccagcaggacctccaggacaaaaaggtgccatgggagagacggggcttccaggtgtc
ccaggtattaaaggctttcaaggcatagcaggacgtcctggccagcctggccctccagga
tttccaggattaaagggggagaaaggcaacccaggtctttcagatattggaatccctggt
cctaagggtgacactggtttccctggatacccaggtaaccctggcagcaaaggtacacct
ggaaatcctggtttgactggattaccaggtaatccaggtgcaaaaggagaagcaggcctt
cctggattcccagggacaccaggaattccaggaccaaaaggtattgatggacccccaggt
aatcctggtctccctggatcacctgggccaccaggtgatgttggccgtcctggcccccca
ggtcttccaggggagaaagggcagccaggtcgggatggtattcctggaccagctggacag
aagggtgaaccaggtcagccaggttttgggcgcccaggacctcctggactcccaggatta
tcagggcaaaagggcgagatgggattacctggccttccaggagcccctggacttacaggt
ttgaagggtgaaccaggtttccagggattccccggtctacaaggtccacaaggtccacca
ggcctgcctgggccacctatggaaggtcttaaaggtagtcctggtccacaaggtgtaccg
gggagaccaggtccctcaggtcctccaggtctgccagggccagaaggtccacggggtccc
cctggaaatggaggatttaaaggagaaaaaggaaacccaggtcagcctggccagcctggc
ctccctggtctaaaaggagatcaaggaccacctggacgccagggtgatcctggtcgtcct
ggcctgaatggaatgaaaggtgatcccggggttccaggtgttccaggatttccaggtatg
aagggccccattggacctccaggagcaattggttttaaaggtgatcaaggcccatcaggt
ccaccaggtccaccaggcttacctggcccttctggacaaaccattgtagtaaaaggtgac
tcaggtcctccaggtccaccagggcagcctggattgccaggcccatcaggattgccaggt
ccaccaggattgccaggtccaataggccttccaggggatcctgggcgagatggacttcct
ggatttgatggtccaggaggacgtaaaggcgagacaggacttccaggccaaccaggcttt
caaggtacgcagggaccccctggtcctgatggcttgcaaggcccaccaggtcctcctgga
acagcttctgttgctcatggattccttataactcgacacagccagactacagacacacca
ctgtgcccacaaggaacaataaggatatacgatggattttctcttctgtacgtgcaggga
aatgagagggcccatggccaggacttaggtactgctgggagctgtctccgccgtttcagc
accatgcccttcatgttctgtaacatcaacaatgtgtgtaattttgcatcaagaaatgat
tattcctattggctgtccactccgaagccaatgccaatgagcatggagccactgactggg
cagagcattcagccattcattagccgatgtgcagtatgtgaagctcctgccatggttata
gctgtccatagtcagaccattcaaattccgtcatgtccgcaaggctgggactctctttgg
attggttattctttcatgatgcacactagtgctggtgcagagggctctggacaggccttg
gcatccccaggttcctgtttggaagaattccgctcagctccttttattgagtgtcatggt
cgtggtacttgtaattactacgccaattcatacagtttctggctggcaactgtagagata
tcagaaatgtttagtaaacctcagtcagagacattgaaagctggagacctgaggacacgt
attagtcgttgtcaagtttgtatgaagaggacgtaa
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