Dermochelys coriacea (leatherback sea turtle): 119861845
Help
Entry
119861845 CDS
T09064
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc04382
Cornified envelope formation
dcc04510
Focal adhesion
dcc04512
ECM-receptor interaction
dcc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119861845 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119861845 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119861845 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119861845 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dcc04147
]
119861845 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
dcc00536
]
119861845 (COL4A4)
Exosome [BR:
dcc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119861845 (COL4A4)
Glycosaminoglycan binding proteins [BR:
dcc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119861845 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119861845
NCBI-ProteinID:
XP_038273442
LinkDB
All DBs
Position
9:35399492..35549262
Genome browser
AA seq
1760 aa
AA seq
DB search
MPPARHRGAAEAGPGEEPAGDWTPHPGAGGRRAERRELREGAGARASGPLRPLCHSRDSA
SAWSPAAAALPAGPGEPPARQPARSMPSAGLLLNAPTWWLMTIFSVQQIYGGKYSYIGPC
GGQDCSVCQCFPEKGSRGQPGHLGPQGPIGSLGWTGPDGLPGEKGERGEKGLPGPTGEKG
DKGPSGVPGFPGLDGAPGYPGIEGSRGKPGLDGCNGSRGEPGFPGETGCIGPRGSFGALA
QKGEKGNSAYISDFIRGAPGARGEPGPPGTPGPRGARGPRGPHGLPGQPGLQGAAGLPGL
QGEQGNPGTGVDGQKGELGDVGPPGSPGQPLLVGPPDSFLVKGEKGIKGMPGLVGPKGSH
GPKGTPGNGEKGEKGIPGDPGVQGSPGSCGSLGFPGIKGASGVPGVPGQAGYPGLKGDRG
ERGQPGLPGVFGTPPVAMKGSRGDPGLPGPSGDDGLIGLTGPPGPSGRPGEDGTSLPGLP
GACGQQGPKGSHGDPGLPGTAESTPGRPGSPGAPGLPGAPGRQGLSGPPGIVCHGRGLHG
HQGIKGQMGPLGRRGEKGEKGNHGHCSCDLGPAGPPGRLGPPGRQGRKGQTGFPGSYGEK
GDPGFSGTIGSTGLPGKPGSSGVAGEKGEKGDLAIVKIKGIKGKRGPLGVPGLPGQKGTA
GRDGDPGLPGERGIQGDGGSALPGDKGFLGAPGLPGSRGPVGSSGLGFPGPQGIRGHPGD
PGSTGISGPPGPKGQRGDIHCYVPPYPGSPGPPGFQGAHGPKGLRGPPGPPGPNGFAGQK
GQRGKPGTSGDIGPDGFRGNTGDPGDEGERGSSPDGAPGFPGNPGLSGQKGVPGDTSYGL
PGIPGHRGLPGLPGLQGIRGESGTPGPQGQSGRPGFPGSTGLRGRKGEIGAPGSPGQPCD
KGLQGPPGQLGVLGQRGPPGLPGFKGQKGDMGPPGPAGMKGLPGSPGVPGSPGPPGPRGY
PGLLGSNGLPGLPGQRGSKGIQGIQGFPGISGKGGQTGIPGGHGEQGEMGSRGPSGECGD
EGQKGERGAQGDSGFITLWLEKGQKGEQGLPGEAGFPGETGEKGSLGIRGIPGFPGKDGL
PGTQKGEPGDCGQIGFPGLPGSPGLAGLRGITGFQGQPGDQGERGLPGIPGRPGRDGAKG
LKGNRGDSGSLYGAPGQRGPPGDCGSPGPCGFPGEQGLPGFQGEPGRQGPKGMPGSPGTK
GFPGAICDSGFPGVPGGQGNTGPLGAAGLPGSPGPPGRKGLSGLPGLDGLNGLQGQKGSP
GVPGKSEIGPPGYTGAPGPKGDKGEPGQPGISLPGPPGDTGLPGHPGRTGDTGPAGSVGR
SPETAASGPPGDQGPPGSHGIRGLPGNPGPPGKTIFVKGDPGEFGVPGAPGIPGQPGQQG
AKGFPGNGGRGGLKGPMGNPGPQGLPGPVGPSGDRGFQGQPGPQGPEGCRGDPGEPGRTE
HSPCPKTPGPHGVIGQRGTEGSVGFPGPIGYLGPPGSKGEEGLFGLPGQDGSPGPPGPSG
DQGVIGERGYTGPEGPPGQAGIPGPPAPETRAASGFLLILHSQSDKEPFCPEGMPRLWTG
YSLLYLEGQEKAHNQDLGLAGSCLPVFSTMPFVFCNIHQVCYYASRNDKSYWLSTAAPLP
MMPLSEDEIQPYISRCAVCEASAQAVAVHSQDQSIPPCPLNWRSLWIGYSFLMHTGSGDQ
GGGQSLMSPGSCLEDFRSAPFIECQGQRGTCQFFANEYSFWLTIVRPELQFVSASVSETL
KEGHEQRKKISRCQVCMKHG
NT seq
5283 nt
NT seq
+upstream
nt +downstream
nt
atgccccccgcgaggcaccgcggggcggcggaggccgggccgggcgaggagccagccggg
gattggacgccccaccccggcgctgggggccgacgggccgagcggcgggagctgcgcgaa
ggggcgggggcccgggctagcgggccgctccggcctctttgccacagccgcgactctgcc
tccgcctggagtcccgccgcagcagccctgcccgcgggcccgggagagccgcccgcccgc
cagcccgcccgcagcatgcccagcgcggggcttcttctcaacgccccgacctggtggcta
atgacaattttttcagtgcaacaaatttatgggggcaaatattcatatattggtccatgt
ggaggacaagattgttcggtttgccagtgctttcctgaaaaaggatcaagaggtcagcct
ggtcacctagggcctcaaggtccaattggatctttgggatggacagggccagatggtttg
ccaggagaaaaaggagagagaggtgagaaagggctgcctgggcccactggagaaaagggt
gataagggcccatcaggagtcccaggatttcctggtttagatggtgcgcctggatatcct
ggaattgaagggtccaggggcaaacctggcttggatggctgcaatggttcaagaggagag
cccggatttccaggagagacagggtgtattggaccaagaggttcatttggtgctcttgcg
caaaaaggagaaaaaggaaactctgcatatatttcagatttcattagaggtgctccagga
gcaagaggtgaaccaggcccccctggcacacctggacctaggggagctaggggaccaagg
ggcccacatggattgccaggtcaaccaggcttgcagggagctgcgggccttcctggtttg
caaggtgaacagggcaatccaggtactggagtggatggacaaaagggggagctgggtgat
gttggacctcctggatctccaggacagccattgttggttgggcctcctgattctttcctg
gttaaaggagaaaagggtataaaaggaatgcctgggttggtaggacccaaaggatcacat
gggcccaaaggtacacctggaaatggagagaagggtgaaaaaggtattcctggagaccct
ggagtgcagggtagccctggttcttgtggatctctaggttttccaggaataaagggggca
agtggagttcctggtgttcctggtcaggctggttatccaggtctaaagggggatcgtgga
gaacgagggcaaccaggccttcctggagtttttggaacaccacctgttgctatgaaaggt
tctcgaggggatcctggattaccaggtccttctggagatgatgggttgattggactaact
ggtcctccaggtccatcaggaagacctggtgaagatggaacaagcctccctggtctgcca
ggagcatgtggacaacaaggtcctaaaggttctcacggggatcctggtctccctggaact
gctgaatcaactccaggaagaccagggtctccaggagcaccaggattaccaggagcacca
ggaagacagggtttgtctggaccacctggtatagtttgtcatggcagaggtctccatgga
catcaaggaataaaaggccaaatgggacccctgggaagaagaggtgaaaaaggcgaaaaa
gggaatcatggccactgttcatgtgaccttggtcctgctggcccacctggtagactgggg
ccacctggtcgtcaaggaaggaaaggacagacgggatttcctggaagctatggagaaaag
ggtgatccaggtttctctggcacaataggctcaacaggactcccaggcaagcctggttct
tctggagtagctggtgaaaaaggagaaaagggtgacctggccatagtgaaaatcaaagga
ataaaaggaaaaagaggccctctaggggttccaggacttccaggccaaaaaggtactgct
ggcagagatggagatccaggattgcctggagagagaggaattcaaggtgatggtggatca
gcactgccaggtgataaaggatttcttggggcaccaggacttcctggttcaagagggcct
gtgggatcatcagggttgggatttcctggcccacagggaatcaggggtcatcctggagac
ccaggaagtactggcataagtgggccacctggtccaaagggtcaaagaggtgacatccac
tgttatgttccaccatatcctggaagtccaggccctccaggttttcaaggggctcacgga
ccaaagggattaagaggaccccctggtcctcctgggccaaatggctttgctgggcaaaag
ggccaacgaggcaaaccaggaacatcaggagatatagggccagatggctttcgaggcaat
actggtgatccaggtgatgaaggcgaaagaggttcttctcctgatggtgcccccggtttc
cctggcaatcctggactttcaggtcaaaaaggtgttccaggtgataccagttatggtctt
ccaggaattccaggccacagagggttgccaggattacctggtttacaaggaatacgaggt
gaatcaggcactcccgggccacaaggacagtctggcagaccaggatttccaggttctaca
ggtctgagaggcagaaaaggtgaaataggagctccaggttcacccggtcagccatgtgat
aaaggcttacaagggccaccaggacagctaggagttcttggacagcgaggccctccaggc
ttaccaggttttaaaggtcagaaaggagacatgggcccaccaggaccagctggaatgaaa
ggcctaccaggatctcctggtgtaccagggtcccctggtcctccaggccctcgaggatat
ccagggcttcttgggagcaatggattacctggactcccaggccaacgaggtagcaaaggc
attcaaggcatccaaggtttcccaggaatctcaggaaaaggaggacagacaggaattccg
ggtggacatggtgaacaaggagaaatgggctcaagggggccttctggagaatgtggggat
gaagggcaaaaaggtgaaagaggtgctcaaggagacagtggcttcattaccttatggctg
gaaaaaggacaaaagggggaacaagggcttcctggtgaggctggatttccaggggaaaca
ggtgaaaaaggcagtcttggaatcagagggatcccaggatttccaggcaaagatggactc
ccaggaactcagaagggtgaacctggtgattgtggacagattgggtttccagggctgcca
ggctccccaggattggcaggtttaagaggaattactggttttcaaggacaaccaggtgac
cagggtgagcgaggtttaccgggaattcctggacgtccaggccgtgatggtgcaaaagga
cttaaaggtaacagaggtgactcgggcagtctatatggtgcacctggtcaaagaggtcct
ccaggagattgtggatcaccaggaccctgtggattcccaggagaacaaggtttaccaggt
ttccaaggggaacctggaagacaaggacccaaggggatgcctggatccccaggaacaaaa
ggctttccaggtgctatatgtgattcgggatttccaggagttccaggtggacaaggcaat
accgggcctttaggagctgcaggattgccaggatcacctggtcccccaggcaggaaaggt
ttatcagggttgcctggattagatggcttgaatggactgcaaggtcaaaagggctcacca
ggagttccaggtaaaagtgaaatagggcctccaggatacacaggggcacctggaccaaaa
ggagacaagggtgaacctggacagccaggaatttctcttccaggacctcctggagacacg
ggtttgccaggacacccaggtagaacaggagataccgggcctgcaggatctgtgggaaga
tctcctgaaactgcagcttctggtcctccgggtgatcaggggccacctggttcacatggc
atcagaggcctgcctggcaatcctggccctcctggaaagactatctttgtgaagggcgat
ccgggggaatttggtgttccaggtgcacccggtattcctggccagccagggcagcaagga
gccaaaggctttccaggaaatggaggaagaggaggcctgaaaggtccgatgggaaaccct
ggcccccagggtctccctggccctgttgggccatctggggatcgaggttttcaaggacaa
cctggccctcaaggtcctgaaggttgcagaggtgaccctggtgaaccaggaagaacagaa
cactccccatgtcccaagacaccaggtcctcatggagtaataggacaaagaggaactgaa
gggtctgtaggatttccagggccaataggttaccttggacccccaggaagtaaaggtgaa
gaagggttgtttggcttgccaggtcaagatggctcacctggtccaccaggaccctcaggt
gaccaaggtgtcataggagaacgaggatacactggtccagaaggtccacctggccaagct
ggaatcccaggaccaccagcgcctgaaacgagagctgctagtgggttcctgctcattctt
cacagtcagtcagataaagaaccattttgtcctgagggaatgccaagattgtggacagga
tatagtctgctctatttggaaggacaggagaaagctcataatcaagatcttggtctggca
ggatcctgtcttcctgtattcagcaccatgccgtttgtcttctgcaatatccaccaagtt
tgttactatgccagtcgaaatgataagtcctactggctgtcaactgctgctcctttacca
atgatgcctctctctgaagatgaaatacaaccctacattagcagatgtgctgtatgtgag
gcctcagcccaagctgtagcagttcatagccaagatcagtccattcccccatgcccattg
aactggagaagtctttggataggctattcttttttaatgcacactgggtctggagatcag
ggaggtggacagtctcttatgtcacctggaagttgccttgaagactttagatcagcacca
ttcattgaatgccagggtcagcggggaacatgtcaattttttgctaatgaatatagcttc
tggttaacaatcgtcaggccagaattgcagtttgtgtctgcttctgtgtcagaaaccctt
aaagaagggcatgaacagcgcaaaaaaattagcagatgtcaggtctgcatgaagcatggc
taa
DBGET
integrated database retrieval system
