Dermochelys coriacea (leatherback sea turtle): 119861845
Help
Entry
119861845 CDS
T09064
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc04510
Focal adhesion
dcc04512
ECM-receptor interaction
dcc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119861845 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119861845 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119861845 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dcc04147
]
119861845 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
dcc00536
]
119861845 (COL4A4)
Exosome [BR:
dcc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119861845 (COL4A4)
Glycosaminoglycan binding proteins [BR:
dcc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119861845 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119861845
NCBI-ProteinID:
XP_038273442
LinkDB
All DBs
Position
9:35399492..35549262
Genome browser
AA seq
1760 aa
AA seq
DB search
MPPARHRGAAEAGPGEEPAGDWTPHPGAGGRRAERRELREGAGARASGPLRPLCHSRDSA
SAWSPAAAALPAGPGEPPARQPARSMPSAGLLLNAPTWWLMTIFSVQQIYGGKYSYIGPC
GGQDCSVCQCFPEKGSRGQPGHLGPQGPIGSLGWTGPDGLPGEKGERGEKGLPGPTGEKG
DKGPSGVPGFPGLDGAPGYPGIEGSRGKPGLDGCNGSRGEPGFPGETGCIGPRGSFGALA
QKGEKGNSAYISDFIRGAPGARGEPGPPGTPGPRGARGPRGPHGLPGQPGLQGAAGLPGL
QGEQGNPGTGVDGQKGELGDVGPPGSPGQPLLVGPPDSFLVKGEKGIKGMPGLVGPKGSH
GPKGTPGNGEKGEKGIPGDPGVQGSPGSCGSLGFPGIKGASGVPGVPGQAGYPGLKGDRG
ERGQPGLPGVFGTPPVAMKGSRGDPGLPGPSGDDGLIGLTGPPGPSGRPGEDGTSLPGLP
GACGQQGPKGSHGDPGLPGTAESTPGRPGSPGAPGLPGAPGRQGLSGPPGIVCHGRGLHG
HQGIKGQMGPLGRRGEKGEKGNHGHCSCDLGPAGPPGRLGPPGRQGRKGQTGFPGSYGEK
GDPGFSGTIGSTGLPGKPGSSGVAGEKGEKGDLAIVKIKGIKGKRGPLGVPGLPGQKGTA
GRDGDPGLPGERGIQGDGGSALPGDKGFLGAPGLPGSRGPVGSSGLGFPGPQGIRGHPGD
PGSTGISGPPGPKGQRGDIHCYVPPYPGSPGPPGFQGAHGPKGLRGPPGPPGPNGFAGQK
GQRGKPGTSGDIGPDGFRGNTGDPGDEGERGSSPDGAPGFPGNPGLSGQKGVPGDTSYGL
PGIPGHRGLPGLPGLQGIRGESGTPGPQGQSGRPGFPGSTGLRGRKGEIGAPGSPGQPCD
KGLQGPPGQLGVLGQRGPPGLPGFKGQKGDMGPPGPAGMKGLPGSPGVPGSPGPPGPRGY
PGLLGSNGLPGLPGQRGSKGIQGIQGFPGISGKGGQTGIPGGHGEQGEMGSRGPSGECGD
EGQKGERGAQGDSGFITLWLEKGQKGEQGLPGEAGFPGETGEKGSLGIRGIPGFPGKDGL
PGTQKGEPGDCGQIGFPGLPGSPGLAGLRGITGFQGQPGDQGERGLPGIPGRPGRDGAKG
LKGNRGDSGSLYGAPGQRGPPGDCGSPGPCGFPGEQGLPGFQGEPGRQGPKGMPGSPGTK
GFPGAICDSGFPGVPGGQGNTGPLGAAGLPGSPGPPGRKGLSGLPGLDGLNGLQGQKGSP
GVPGKSEIGPPGYTGAPGPKGDKGEPGQPGISLPGPPGDTGLPGHPGRTGDTGPAGSVGR
SPETAASGPPGDQGPPGSHGIRGLPGNPGPPGKTIFVKGDPGEFGVPGAPGIPGQPGQQG
AKGFPGNGGRGGLKGPMGNPGPQGLPGPVGPSGDRGFQGQPGPQGPEGCRGDPGEPGRTE
HSPCPKTPGPHGVIGQRGTEGSVGFPGPIGYLGPPGSKGEEGLFGLPGQDGSPGPPGPSG
DQGVIGERGYTGPEGPPGQAGIPGPPAPETRAASGFLLILHSQSDKEPFCPEGMPRLWTG
YSLLYLEGQEKAHNQDLGLAGSCLPVFSTMPFVFCNIHQVCYYASRNDKSYWLSTAAPLP
MMPLSEDEIQPYISRCAVCEASAQAVAVHSQDQSIPPCPLNWRSLWIGYSFLMHTGSGDQ
GGGQSLMSPGSCLEDFRSAPFIECQGQRGTCQFFANEYSFWLTIVRPELQFVSASVSETL
KEGHEQRKKISRCQVCMKHG
NT seq
5283 nt
NT seq
+upstream
nt +downstream
nt
atgccccccgcgaggcaccgcggggcggcggaggccgggccgggcgaggagccagccggg
gattggacgccccaccccggcgctgggggccgacgggccgagcggcgggagctgcgcgaa
ggggcgggggcccgggctagcgggccgctccggcctctttgccacagccgcgactctgcc
tccgcctggagtcccgccgcagcagccctgcccgcgggcccgggagagccgcccgcccgc
cagcccgcccgcagcatgcccagcgcggggcttcttctcaacgccccgacctggtggcta
atgacaattttttcagtgcaacaaatttatgggggcaaatattcatatattggtccatgt
ggaggacaagattgttcggtttgccagtgctttcctgaaaaaggatcaagaggtcagcct
ggtcacctagggcctcaaggtccaattggatctttgggatggacagggccagatggtttg
ccaggagaaaaaggagagagaggtgagaaagggctgcctgggcccactggagaaaagggt
gataagggcccatcaggagtcccaggatttcctggtttagatggtgcgcctggatatcct
ggaattgaagggtccaggggcaaacctggcttggatggctgcaatggttcaagaggagag
cccggatttccaggagagacagggtgtattggaccaagaggttcatttggtgctcttgcg
caaaaaggagaaaaaggaaactctgcatatatttcagatttcattagaggtgctccagga
gcaagaggtgaaccaggcccccctggcacacctggacctaggggagctaggggaccaagg
ggcccacatggattgccaggtcaaccaggcttgcagggagctgcgggccttcctggtttg
caaggtgaacagggcaatccaggtactggagtggatggacaaaagggggagctgggtgat
gttggacctcctggatctccaggacagccattgttggttgggcctcctgattctttcctg
gttaaaggagaaaagggtataaaaggaatgcctgggttggtaggacccaaaggatcacat
gggcccaaaggtacacctggaaatggagagaagggtgaaaaaggtattcctggagaccct
ggagtgcagggtagccctggttcttgtggatctctaggttttccaggaataaagggggca
agtggagttcctggtgttcctggtcaggctggttatccaggtctaaagggggatcgtgga
gaacgagggcaaccaggccttcctggagtttttggaacaccacctgttgctatgaaaggt
tctcgaggggatcctggattaccaggtccttctggagatgatgggttgattggactaact
ggtcctccaggtccatcaggaagacctggtgaagatggaacaagcctccctggtctgcca
ggagcatgtggacaacaaggtcctaaaggttctcacggggatcctggtctccctggaact
gctgaatcaactccaggaagaccagggtctccaggagcaccaggattaccaggagcacca
ggaagacagggtttgtctggaccacctggtatagtttgtcatggcagaggtctccatgga
catcaaggaataaaaggccaaatgggacccctgggaagaagaggtgaaaaaggcgaaaaa
gggaatcatggccactgttcatgtgaccttggtcctgctggcccacctggtagactgggg
ccacctggtcgtcaaggaaggaaaggacagacgggatttcctggaagctatggagaaaag
ggtgatccaggtttctctggcacaataggctcaacaggactcccaggcaagcctggttct
tctggagtagctggtgaaaaaggagaaaagggtgacctggccatagtgaaaatcaaagga
ataaaaggaaaaagaggccctctaggggttccaggacttccaggccaaaaaggtactgct
ggcagagatggagatccaggattgcctggagagagaggaattcaaggtgatggtggatca
gcactgccaggtgataaaggatttcttggggcaccaggacttcctggttcaagagggcct
gtgggatcatcagggttgggatttcctggcccacagggaatcaggggtcatcctggagac
ccaggaagtactggcataagtgggccacctggtccaaagggtcaaagaggtgacatccac
tgttatgttccaccatatcctggaagtccaggccctccaggttttcaaggggctcacgga
ccaaagggattaagaggaccccctggtcctcctgggccaaatggctttgctgggcaaaag
ggccaacgaggcaaaccaggaacatcaggagatatagggccagatggctttcgaggcaat
actggtgatccaggtgatgaaggcgaaagaggttcttctcctgatggtgcccccggtttc
cctggcaatcctggactttcaggtcaaaaaggtgttccaggtgataccagttatggtctt
ccaggaattccaggccacagagggttgccaggattacctggtttacaaggaatacgaggt
gaatcaggcactcccgggccacaaggacagtctggcagaccaggatttccaggttctaca
ggtctgagaggcagaaaaggtgaaataggagctccaggttcacccggtcagccatgtgat
aaaggcttacaagggccaccaggacagctaggagttcttggacagcgaggccctccaggc
ttaccaggttttaaaggtcagaaaggagacatgggcccaccaggaccagctggaatgaaa
ggcctaccaggatctcctggtgtaccagggtcccctggtcctccaggccctcgaggatat
ccagggcttcttgggagcaatggattacctggactcccaggccaacgaggtagcaaaggc
attcaaggcatccaaggtttcccaggaatctcaggaaaaggaggacagacaggaattccg
ggtggacatggtgaacaaggagaaatgggctcaagggggccttctggagaatgtggggat
gaagggcaaaaaggtgaaagaggtgctcaaggagacagtggcttcattaccttatggctg
gaaaaaggacaaaagggggaacaagggcttcctggtgaggctggatttccaggggaaaca
ggtgaaaaaggcagtcttggaatcagagggatcccaggatttccaggcaaagatggactc
ccaggaactcagaagggtgaacctggtgattgtggacagattgggtttccagggctgcca
ggctccccaggattggcaggtttaagaggaattactggttttcaaggacaaccaggtgac
cagggtgagcgaggtttaccgggaattcctggacgtccaggccgtgatggtgcaaaagga
cttaaaggtaacagaggtgactcgggcagtctatatggtgcacctggtcaaagaggtcct
ccaggagattgtggatcaccaggaccctgtggattcccaggagaacaaggtttaccaggt
ttccaaggggaacctggaagacaaggacccaaggggatgcctggatccccaggaacaaaa
ggctttccaggtgctatatgtgattcgggatttccaggagttccaggtggacaaggcaat
accgggcctttaggagctgcaggattgccaggatcacctggtcccccaggcaggaaaggt
ttatcagggttgcctggattagatggcttgaatggactgcaaggtcaaaagggctcacca
ggagttccaggtaaaagtgaaatagggcctccaggatacacaggggcacctggaccaaaa
ggagacaagggtgaacctggacagccaggaatttctcttccaggacctcctggagacacg
ggtttgccaggacacccaggtagaacaggagataccgggcctgcaggatctgtgggaaga
tctcctgaaactgcagcttctggtcctccgggtgatcaggggccacctggttcacatggc
atcagaggcctgcctggcaatcctggccctcctggaaagactatctttgtgaagggcgat
ccgggggaatttggtgttccaggtgcacccggtattcctggccagccagggcagcaagga
gccaaaggctttccaggaaatggaggaagaggaggcctgaaaggtccgatgggaaaccct
ggcccccagggtctccctggccctgttgggccatctggggatcgaggttttcaaggacaa
cctggccctcaaggtcctgaaggttgcagaggtgaccctggtgaaccaggaagaacagaa
cactccccatgtcccaagacaccaggtcctcatggagtaataggacaaagaggaactgaa
gggtctgtaggatttccagggccaataggttaccttggacccccaggaagtaaaggtgaa
gaagggttgtttggcttgccaggtcaagatggctcacctggtccaccaggaccctcaggt
gaccaaggtgtcataggagaacgaggatacactggtccagaaggtccacctggccaagct
ggaatcccaggaccaccagcgcctgaaacgagagctgctagtgggttcctgctcattctt
cacagtcagtcagataaagaaccattttgtcctgagggaatgccaagattgtggacagga
tatagtctgctctatttggaaggacaggagaaagctcataatcaagatcttggtctggca
ggatcctgtcttcctgtattcagcaccatgccgtttgtcttctgcaatatccaccaagtt
tgttactatgccagtcgaaatgataagtcctactggctgtcaactgctgctcctttacca
atgatgcctctctctgaagatgaaatacaaccctacattagcagatgtgctgtatgtgag
gcctcagcccaagctgtagcagttcatagccaagatcagtccattcccccatgcccattg
aactggagaagtctttggataggctattcttttttaatgcacactgggtctggagatcag
ggaggtggacagtctcttatgtcacctggaagttgccttgaagactttagatcagcacca
ttcattgaatgccagggtcagcggggaacatgtcaattttttgctaatgaatatagcttc
tggttaacaatcgtcaggccagaattgcagtttgtgtctgcttctgtgtcagaaaccctt
aaagaagggcatgaacagcgcaaaaaaattagcagatgtcaggtctgcatgaagcatggc
taa
DBGET
integrated database retrieval system
