Dermochelys coriacea (leatherback sea turtle): 119862507
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Entry
119862507 CDS
T09064
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X2
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
119862507 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dcc04121
]
119862507 (SLX4)
03400 DNA repair and recombination proteins [BR:
dcc03400
]
119862507 (SLX4)
Ubiquitin system [BR:
dcc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
119862507 (SLX4)
DNA repair and recombination proteins [BR:
dcc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
119862507 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
B129_C2H2-zf
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
119862507
NCBI-ProteinID:
XP_038275258
LinkDB
All DBs
Position
10:complement(33345500..33384397)
Genome browser
AA seq
1872 aa
AA seq
DB search
MDELDDDFKELCANLLSRVRKKAGDAEGGRKVQSGTRSTATKSKLKKSKSAAKSKSQHDS
SVGKRVGLPGCTDPSEQALGHEPEGEATTCGNDGPPLGDGNGDPPSAIQLYAMAPNCNQN
SLAGSDKRRSSFAADAEPATSTSSPAKMRQISGTRLRVAELVLERMQQFKRVEPKQLKHT
VGSILPETVTNESIPDVSQENHQPGNVTTPDLPAKEPDVALAVALQQELKEEVPGSLEEA
GLFFCQICQKDLSAMNATRREQHVNRCLDEMEKSEAPSSSNPQIPECPICGKRFHTPKSR
ASHLKRCAVKMEVPPQLLLQAVQLQALALSDGLPVAPSNQLGRSKRKGSSKEEESKKKQK
TSKVETTDEDLLVAMAMSRSLLEQIRQEEAKSVTSIKLESPLPIKWKPGAEKKRRKNTPL
MPPPLLLQDPETAHKRIQNRMAMLLTEEVEFPSTPLLPASRILEEEPGKAAWLLSLPKDQ
RCILWEYSTLTGPCVPESFYAVGLTPPILPWKPVQLQTSSNHPDPASVGLENRTSDDPQA
DPDAEQQFLSCSQKDVQTLEDLVELAGEGLTLTQWNTDVDHTRAVKQMRGESVAGDIPLS
GFVPPSKVKMCQSGSLHTSSLRSLAVDFSGMVNNPHLSDVQFQVESGEVLYAHMFVLYAR
CPQLTEVVHGEGFLVEEDGNLQTRRVLLSEVTVEAAHAFLQYLYAADISIPAQVLSDVGA
LAVRFGVSELISICENSPGEKQELAGVDSGDELFSVGEEENCENRAENFQELLRSMWVDE
DEEEEEEEAMLKPEDEEDNEKVDEQELEEIYEFVATQRKIVQDVAEVEEGSGRCIYSETE
EAQNVNRQTEDEDVVVCESPSTSSKIKERKENFGLGISSCESPGQEKKILGISRSESMSI
TRIAPVHLQGKPCECSDISAFHGGTSHEREGCRRMPKVVKVSRFSQISQGEEEDDALEKL
FPSCQRYGGDFSKRYDPMFSATQGEHCEPSPLNEANKESGEISSETLVEVNNPPVHHQSQ
KDLLSVRSDLCSSPLINPSSPVLPAVGSSPMSPESNRPFSRVSTEMSPVSAPKQNRNKGF
FQSDGASFQKASEQNDDSGLETIIKNTLSPAKSSHIDLKKQKHVPTCSSLVLTTQNTASH
VNQEAEVILLLDSDEEMELEQMKEKSDSESSLREMEISRRLECNCKKVEQEHKVPNSGPV
SVADIAIHQRPFQVSLGSQDKVHSENAVKLSGKMPLNNQVGTCIDSRLNLSHEESSNMDT
SWLVPDTPLLTRSRNCSTLTQATSLSCLRSPGSKHRTKALLVNNSDHKQAGEAMKIPEIT
SDLLLATSSQKHFLTENSSVSKKTSPGSPLGHFWKDSLQVSPAPLSPACVRVKEKSSENL
SSPKQGLPCRELSLENKTDISVVEVEDSEEEKEVALLPSSGSFLLGDEPPIPVDDDCWSV
EHLSPIKDNNKVLERVNCANTSSFIHGENGFQHHQWKSPTRALEITGSTPLRGIVGNRKT
LLCHEESPIEAHSSVSNRLSFLNSKVWDEWDEDEVPEILPLTQRVSAAAAAQNTQPLKTP
DPACHKRNQPPRVPITPVPAYSIMETPELKKELNRFGVRRLPKRQMVLKLKEIFQYTHQI
MSSDSEDEIPSSQSPLRKATAKHPSQPQPDSIELREENSKASSVGREQKLGVSVPSLPVL
GSGDADSSAGPSTTGYLRTKKTAETKGHPGGARRLKGATLSPTTSPVKGSLAGSADGQVL
SASQESAASSAAGSDNSFGSQSSSSNEFETGVLTSEEDEEFPASQAAAREADKLEAVRRY
IHSNPGLYQKILLYQPFELTGLQAELKQNGIKIALGKLLDFLDAHCITFTTAGARKEKQQ
QRGGKKKGCKRY
NT seq
5619 nt
NT seq
+upstream
nt +downstream
nt
atggatgagctggacgatgattttaaagaactctgtgctaacctattgagcagggtcagg
aaaaaggctggagatgccgagggagggaggaaggttcagagtgggacaaggagcactgca
acaaaaagcaaattaaaaaagagcaagtcagctgctaagagcaaaagccagcatgactcc
tctgttggaaagagagtgggcttgccagggtgcacggaccccagtgagcaggcattggga
catgaaccagaaggtgaagctacaacctgtggaaatgatggacctccactgggagatgga
aatggagaccctccttctgccattcagttgtatgctatggcaccaaactgtaaccagaac
agcttggcaggcagtgacaagcgcagatcatcctttgctgctgatgcagaaccagcaacc
tccacctcatcccctgcaaagatgcgccagatctcaggaaccaggctgcgggtagcagag
ctggtgctggagaggatgcagcagtttaagagagtggaaccaaaacagctgaaacacacc
gtgggcagcatcttgccagagacagtaacaaatgaaagcatccctgatgtgagccaggag
aaccaccagccaggaaatgtgaccactccggatctgcctgcgaaggagccagatgttgcc
ctggcagtggccctccagcaggagctcaaagaagaagtacctggaagtctggaagaggca
ggcttatttttttgtcagatctgtcagaaagacctctcagccatgaatgcaacacgacgg
gagcagcatgttaacaggtgtctggatgagatggagaagtcagaggcgccctcttccagc
aacccacagatccctgagtgccccatctgtgggaaacggttccatacacccaaaagccga
gccagtcacttgaaacgctgtgctgtcaagatggaagtccctccacagttgcttctccag
gcagtgcaattgcaggcattggccctgagtgatgggctccctgtagcacccagcaatcag
ctaggtaggtcaaagcgaaaaggctcctccaaagaggaggagtcaaagaaaaagcagaag
acatccaaggtggaaaccacagatgaggatcttctggttgccatggcaatgtcacgatct
ctgctggagcaaataaggcaggaggaagcaaaatcggtaacaagcattaaactggagagt
cctttgccgatcaagtggaagcctggagcagagaaaaaaaggcgtaagaacacccccctc
atgcctcctccattgttacttcaagatccagagacagcccataaacggatccaaaaccgg
atggccatgctactaacagaggaggtggagttcccgagcacccctctgctccctgccagc
aggattttggaggaggagcctgggaaggcagcctggcttctatctttgcccaaagaccag
cgttgcattttgtgggagtatagtactttgacaggaccctgtgtcccagagtccttctat
gcagtgggattaacccctcctattttaccttggaaacctgtgcagttacagaccagcagc
aatcatcctgatcctgcttctgtggggcttgaaaacagaacttctgatgacccgcaggca
gatcctgatgcagagcagcagtttctgtcttgcagccagaaggacgttcagactctggag
gacctggtggagctggctggggaaggacttactctcacacagtggaacactgacgttgac
cacaccagggcagtgaagcaaatgagaggagaatcagtggccggcgacattccacttagt
ggcttcgtccctccatccaaggtgaagatgtgccagagcggcagccttcacacatcctca
ctcaggtcgctggctgtcgatttcagtggaatggtcaacaacccccatctaagtgacgtc
cagttccaggtagaaagtggggaagtcctttatgcccatatgtttgtgctttatgcacgg
tgcccacagctgactgaagtcgttcacggtgaaggtttcttagtggaagaggatgggaat
ttgcagacccgtcgagtgctgctgagtgaagtgacagtcgaggcagcccatgcatttctg
cagtacctttatgcagctgatatcagtatccctgcccaggtgctctctgatgtgggagct
cttgccgtcaggtttggtgtgagtgaactgatctctatatgtgaaaacagccctggggag
aagcaggagcttgctggggtggactcaggagatgaacttttctccgtgggggaagaagag
aattgtgagaacagagctgagaacttccaggagctcttgaggtcaatgtgggtagatgaa
gatgaggaagaagaagaagaagaagctatgctgaaacctgaagacgaggaagacaatgag
aaagtggatgagcaggaactggaggaaatttatgagtttgttgccactcagcgaaagatt
gttcaagatgtagcagaggtggaggaaggctcaggcagatgcatttacagtgaaacagag
gaggcccaaaatgtgaaccgacagactgaggatgaagatgtggtggtgtgtgaatctccc
tcaacaagcagcaagattaaagaacggaaggaaaactttggcctgggaatatccagctgt
gaatcacctggacaagaaaagaaaatcctaggtataagtaggagtgagagcatgagcatt
acacgaatcgcacctgtgcacttgcagggtaagccttgtgagtgcagtgacatttcagct
ttccatggtggaacatctcatgaaagagagggctgtcggagaatgcccaaagttgtgaag
gtttctagattctctcagatttcacaaggtgaagaagaggatgatgccttggaaaaactg
ttccctagttgccaacgctatggtggtgacttcagtaaacgctatgatcccatgttttcc
gcaacccaaggagaacattgtgagccttctccactaaatgaagccaacaaagagtcagga
gagatttccagtgaaacacttgttgaggttaataatccacctgttcaccatcagtcacag
aaggacctcctgtcagttaggagtgatttgtgtagcagtcctcttatcaacccttcctca
ccagttttgccagctgttggttcatcacctatgtctccagaatcaaataggccattttcc
agagtatccacagaaatgtctcctgtatcagcaccaaagcaaaatagaaataaaggattc
tttcagtctgatggtgcatccttccaaaaagccagtgaacaaaatgatgattcaggactt
gaaacgatcataaagaacacactttctccagcaaagtcttcccacattgatttaaaaaag
caaaaacatgtcccaacttgctcatcgttggtcctcacaactcagaatactgcttctcac
gtgaaccaagaggctgaagttattcttttgctggattctgatgaagaaatggagttagaa
caaatgaaggagaaatcagattctgaatcttccctgagggaaatggaaatctccaggcga
ttggagtgtaactgtaagaaagtggagcaagagcacaaggtaccaaactctggacctgtt
tcagttgctgacattgcaatacaccagagaccatttcaagtgtcactaggaagtcaagac
aaggtgcacagtgagaatgctgtaaagctgtcaggaaagatgcctcttaacaaccaggtt
gggacctgtattgatagcagactgaatctgagccatgaggagagctctaacatggacacc
tcatggttggtgccagacacacctcttcttaccagaagcaggaactgctcaacactgact
caggcaacaagtttgagttgtttgaggagtccagggtctaagcacaggactaaagcttta
ttggtaaataatagtgaccataaacaagctggggaagctatgaagattccagagataact
tcagatctgttacttgcaacttcctcacaaaaacattttcttacagagaactcctcagtt
agcaaaaaaacctctcctggaagccctttaggtcacttttggaaggattctctgcaagtt
tctccagctccactctcacctgcctgtgttcgtgtgaaagagaagtcttcagaaaacctg
tcttcacccaaacaaggccttccatgccgtgagctgtctttggagaataaaacagacatt
agtgtggttgaggtagaggacagtgaggaggaaaaggaggtggctctgctcccttcgagt
ggcagcttcctgcttggtgatgagccaccaattccagttgatgatgactgctggagtgtc
gaacatctgtcaccaatcaaagataacaacaaggtgcttgagagggtgaactgtgcaaat
accagcagtttcatccacggagaaaatggctttcagcaccaccaatggaagagcccaacc
agagctctggaaattacaggtagtactcctcttcgaggaatagttggcaatagaaagacc
ttgctctgtcatgaggagagtcctattgaggcacattcttcagtgagcaataggctaagt
tttctgaactctaaagtctgggatgagtgggatgaagatgaagtccctgagattcttcct
ctcacacagagggtgtcagctgcagcagctgcccagaatacccagcccctaaaaactcct
gaccctgcctgtcacaagagaaaccagccccccagagttcccataacaccagtaccagct
tactccatcatggagaccccagagctgaagaaggaactgaacagatttggagtccgtcgt
ctcccaaaacggcagatggttttaaagctgaaggagatattccagtatactcatcagatc
atgtcctctgactcggaggatgagatcccatcctcccaatcacccctacggaaagccact
gccaagcaccccagccaaccccaaccagactcgattgaactgagagaagagaattccaaa
gcctccagtgtagggcgtgagcagaagctgggggtttcggtcccttccctgccagttctg
ggcagtggtgatgctgacagctcagcgggcccctctacaacaggctatctgaggactaag
aaaacagctgaaactaaaggccacccaggaggagccagaaggctaaagggagctactttg
tctccaactacatctccagttaaaggttctctggcgggcagtgctgatggacaggtgctc
tcagcatctcaggaatctgcagcttcttcagcagctggaagtgacaactcctttggatca
cagagttcttcttccaatgagtttgagacaggtgtccttacatctgaagaggatgaggag
ttcccagcatctcaggctgcagcccgggaggcagataagctggaggcagtgagacgctac
atccattcaaacccaggcctgtaccagaagatcctcctttatcagccctttgagctgact
gggctgcaggcagagctgaagcagaatggcattaagattgcactgggaaaactgctggac
tttttggacgctcactgtatcacctttaccacggctggggcacggaaagagaagcagcag
caacgcgggggcaagaaaaagggatgcaaacgatactga
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integrated database retrieval system
