Dermochelys coriacea (leatherback sea turtle): 119863079
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Entry
119863079 CDS
T09064
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X4
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
dcc01001
]
119863079 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
dcc04054
]
119863079 (CIITA)
Enzymes [BR:
dcc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
119863079 (CIITA)
Protein kinases [BR:
dcc01001
]
Serine/threonine kinases: Other
TAF1 family
119863079 (CIITA)
Pattern recognition receptors [BR:
dcc04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
119863079 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_14
NB-ARC
nSTAND3
nSTAND_NTPase5
LRR_8
LRR_9
AAA_16
NPHP3_N
RsgA_GTPase
DUF7885
AAA_19
DUF87
Motif
Other DBs
NCBI-GeneID:
119863079
NCBI-ProteinID:
XP_038276769
LinkDB
All DBs
Position
10:complement(23763500..23826966)
Genome browser
AA seq
1170 aa
AA seq
DB search
MDSAVLTENSFLDLLHSNIDPLHLYSLLNTRLSDEDEESELSTDPEIDTINHDQFSNLDV
FYTMESNGSVEESLFSNTGEAYSRIAGLAEYVLKDQQERQMEDIFGKLILDEMSNETTEG
FAEMKKQKCQKRSFVSTAESYSDASKLKCRRTDAAKKVKEGVCTEGSRAVGDVRTSCQKR
VESPGSTLNGTFVAVPLNSSPANSTSLSYLHMQFSVTSIHPTEKNVVMPVSSGNSNLLVG
AKGIQVISGFAVHPQQIINLPVGNGASNIIIYPVSSSPTETLQISPVYPTTLAAQVDLAV
QSILGSPDKNTSMGPFAYMPETAAVTDHTDEEEISNERSQIPVVPSEQILKRSKPVEAFC
TSLKDYFQDVCKFMARDREVTLDHLYIDGALMQGQTDTKSGKNVIKVMEKELVIYNLEEK
EKAAIERSQIFQVLGGKELETKVVVVLGKAGMGKSILVQKICQDWANGKFSQFEFVFWFE
CRRLSLPEKQYSLKDLLLELFIKPREGSDEVFEYILQNPDKVLLIFDGFEELQDHDGFTH
YSDCQSYKELYSIRELFAGLFQKKILSGCTLLLTARPKDKFNQYLSKVDKIIEMIGFSPQ
QVESYIARYFEGLPYSDDAVKLITDCQYLFSHCYSPVMCRFICFLCEMMFEMGDKDLPST
LTSLFVKYLQLIPTQTDVTTTGNQQHITRLAQLAWYLGEKNQNALKSSLFPSKEVKEFAL
KCGLVLPFTFPKHSGNREEEFGSVFSDFVIQNFLSALHLVLTEEIKDKSLTKYLSLPARK
RKPHNWLELVPRFLPGLLYLQHDPYLCSLSDEHVMKIITKKQKTLLKYIKKIQISDLCPE
KLLELLHCVYETQDSYLLQHVALRLKVELSFLGTLLTPPDVYVLHFILKRSPKEFSLDLR
NSGINLQGLKHLVGLKSVTSFRASLGDTVRLWESLEQTKEYELLKISVEKFGIDPFKAET
MKDISDLSDLVRIQEKMIHCMEDAFGSNINEIPAIKNLRKLEFALGPACGLQGFLKLVEI
LAAFSSLQHLDLDALSENEIGDEGTKSLCEVLSELTSLETLNLSQNKITDVGAEQLATAL
PSLSSLKTLSLYNNYICDGGAENIARILPAMASLRVLHVQCNKITDAGAQKLTDSLRKCP
HIKSVAMWNPTIPYGVLEHLQQLDSRISLL
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggattcggcagttttgactgaaaatagctttcttgatttgctgcacagcaatattgat
ccactgcatctatacagcctcttgaacacaaggttatctgatgaagatgaagaaagtgaa
ctttcaacagatcctgaaattgataccatcaaccatgatcagttcagcaatttggatgtc
ttttatacaatggaaagcaatggaagtgtggaagaatctctcttttcaaatacaggggaa
gcttattctagaatagctggattagcagaatatgtgctcaaagatcagcaggagagacag
atggaagacatttttggaaaacttattttggatgaaatgtccaatgaaaccacagagggt
tttgcagagatgaagaagcaaaaatgtcagaaacgatcattcgtgagcactgcagagagt
tactctgatgcttccaagctcaaatgcaggagaacggatgcagcaaagaaggtgaaggaa
ggagtatgtacagaaggcagcagagctgttggggatgtaagaactagttgccagaaaaga
gtggagtcccctgggtctacgctgaatggaacttttgtagcggtgcctctgaacagctct
ccagctaactccacctctttgtcttacctgcacatgcagttttctgttaccagtatacat
ccaaccgaaaaaaatgtcgtgatgcctgtgtcttctggaaattccaatctgcttgttggt
gctaaagggatccaagtgatatccggctttgcagttcatcctcagcagataattaatttg
cctgtagggaatggtgcatccaatattataatatatccagtgtcctcctcccccacagaa
actttacagatatcaccagtttaccccacaaccctggctgctcaagtggacttggctgtc
caaagcattttggggtctcctgacaaaaacacctccatgggcccatttgcttatatgcca
gagactgcagctgtgactgatcatacagatgaagaagaaatatccaatgagagatcacaa
attcctgttgttccttctgaacaaattctcaaaagatcaaagccagtggaagctttctgc
acatcacttaaggattatttccaagatgtgtgcaagttcatggccagggaccgtgaagta
acccttgatcacctttacattgatggagctctcatgcaaggtcaaactgacacaaagagt
gggaaaaatgtcatcaaggtgatggagaaggagctggtaatatacaatttagaagagaag
gaaaaagcagctatagaaagaagccaaatatttcaagtcctgggagggaaagaactagag
acgaaagtcgttgtggtgttgggaaaggcaggaatgggtaaaagcattcttgttcaaaag
atctgccaagactgggccaatggaaagttttctcagtttgaatttgtcttttggtttgag
tgtagacgactgagcttgcctgaaaagcaatacagcttgaaggacctgcttcttgagctc
tttatcaaacctcgagagggaagcgacgaagtcttcgagtacatactgcaaaatcctgat
aaagtcctcctcatctttgatggtttcgaagagttgcaggatcatgatggctttacacat
tactcagactgccagtcttacaaggagctgtacagcatcagggagctatttgcagggctc
ttccagaagaagatactcagtggctgtactttattgctaacagcaagacctaaagacaaa
tttaatcagtatttatccaaagtggacaagattattgaaatgatagggttctctccacag
caggtagaatcatatatagccagatattttgaagggctaccatacagtgatgatgcagtg
aaattaatcacagattgtcaatatctgttcagtcactgctacagccctgtcatgtgtaga
ttcatttgttttctctgcgaaatgatgtttgaaatgggagacaaagaccttccttcaaca
cttaccagcctctttgtaaaataccttcagctgatacctacccaaacagatgtgacaacc
acaggaaatcaacagcacattaccaggctagctcagttagcctggtatcttggagaaaag
aatcaaaatgccctgaagagcagtctttttccctctaaagaagttaaggagtttgctctg
aaatgtggcttagtactgccatttacgttcccaaaacattcaggaaacagggaggaagaa
tttgggagtgtgttctcagactttgttatccaaaattttttgagtgcacttcatctggtg
ctcacagaagagatcaaggataaaagcctcacaaagtacctttcactaccagccaggaag
agaaagcctcataattggttagaattggtgcctcgattcttgcctgggttattgtatctc
cagcatgatccatacctctgctctctttcagatgagcatgtaatgaaaatcataaccaag
aagcagaagactctcttaaaatatattaaaaaaatacagataagtgacctctgtccagaa
aaactacttgagctgctccactgtgtttatgaaacacaggacagctatcttttgcagcat
gtagctttaaggctcaaggttgaactttcttttctgggcactcttcttacaccccctgat
gtctatgtgctgcattttattttaaaaagatccccaaaggagttttccttggatttgagg
aacagcggcattaacctacaagggctgaaacacctggttggcctaaagagtgtgacatca
ttcagggcctcccttggtgatacagtcaggctgtgggagtccttagagcaaacaaaggaa
tatgagctgctgaagatttcagttgagaaatttggtattgatccctttaaggcagaaact
atgaaggacattagtgacctttctgaccttgtacggatacaagagaaaatgatccactgc
atggaagatgcatttggcagcaatattaatgaaattcctgctatcaaaaacctcagaaaa
ctagaatttgccctgggtccagcctgcggccttcagggattcttaaagcttgttgaaatt
cttgcagcattctcatctcttcagcatttagacttggatgctctgagtgaaaatgaaata
ggagatgaaggaacaaaaagcctctgtgaagtattgtctgagctgacatcactggaaaca
ttgaacttatcacagaacaagataacagatgtgggtgcagagcaactagctactgctctt
ccttccttatcatcgttaaagacacttagtttgtacaataactacatttgtgatggtgga
gcagaaaatattgcaagaatacttcctgcaatggcatctttaagggtgctacatgttcag
tgtaacaagataactgatgccggagcccagaaactgactgatagcctcagaaaatgcccc
cacatcaagagtgtggcgatgtggaatcctactattccctatggcgttcttgagcatctt
caacagctagattctcgaatcagtttgctgtag
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