Dermochelys coriacea (leatherback sea turtle): 119863372
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Entry
119863372 CDS
T09064
Symbol
COL3A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Pathway
dcc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119863372 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dcc00536
]
119863372 (COL3A1)
Glycosaminoglycan binding proteins [BR:
dcc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119863372 (COL3A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
119863372
NCBI-ProteinID:
XP_038277664
LinkDB
All DBs
Position
11:52342083..52409518
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AA seq
1467 aa
AA seq
DB search
MMSFVQKVTWLILAVFQPSITLAQQDVIGACTHLGQVYADRDVWKPEPCQICVCDSGSVL
CDDIICDDQELDCPNPEIPFGECCPVCPQLTSPPERPTSPTNGVVRGPKGDPGSPGTPGR
PGTPGSPGQPGSPGSPGQPGVCQSCPSINGGNFSPQYDSYDTKAGGGGPIYPPVIGGLGA
PGPPGLPGPAGQPGPPGTHGYQGSPGEPGQPGPSGPPGPPGLVGPACSSGKMXGEPGRPG
RTGERGLPGPAGHKGPPGMPGFNGMKGHRGFDGRDGAKGDSGAPGLKGENGLPGENGSPG
PMGPRGPAGERGRPGSPGSAGARGNDGTPGTSGQPGPPGPPGTAGFPGSPGAKGEAGAPG
SAGSDGTPGQRGEPGPQGHAGAAGSPGNPGRDGNPGGKGETGPSGIPGAPGLSGARGPPG
PSGINGIPGQRGPPGEPGKNGAKGEPGSRGERGENGIPGAAGPPGEEGKKGANGEPGTNG
VPGTPGERGTPGSRGIPGSNGLPGEKGPAGERGGPGIAGPRGAPGEPGRDGGPGLPGMRG
LTGSPGSPGHDGKPGPPGNQGESGRPGPPGQSGPRGQPGVMGFPGPKGNEGAPGKNGERG
SPGPPGTQGLPGKSGDVGIQGPPGIAGPPGEKGEAGSPGPSGFQGLPGTAGPPGESGKPG
EPGQRGENGAPGLPGTKGENGLPGERGPQGAQGSPGARGGTGPPGPEGGKGPAGAPGPPG
GAGPPGLQGMPGERGGNGNPGPKGEKGEPGGRGGDGFPGKDGPRGSAGPIGPPGPAGPHG
DKGEPGSAGPPGPTGARGGPGDRGEQGPPGPAGFPGAPGQNGEPGGKGERGPGGERGEPG
PAGAAGPQGGPGAPGPAGSQGAKGERGVPGSPGSSGFPGARGMPGPPGNNGNPGPPGNVG
APGKDGGPGPAGSSGXAGSPGSAGPKGEPGQPGEKGSPGSRGEIGPPGSPGPSGIVGQRG
IVGPPGLAGRPGAPGIPGSKGEDGKPGSNGNPGERGAPGLQGPPGLSGSAGESGRDGNPG
SDGLPGRDGSPGPKGDRGENGGPGLPGASGHPGPPGNVXPAGKTGERGHPGPSGPVGPAG
PAVLVVLQVPKGPRGDKGETGERGSNGIKGHRGFPVNPCSPGPPGPLGPQGANGSPGAMG
ARVRSPGPAGPPGKDGTSGYPGPIGPPGPRGNRGESGSAGSPGHPGPAGPPGPPGXPGPC
CGEVMALVVXLVKKGPSSYYYGDQPSENKVNMNDILSSMKSINNQIENIVSPDGSRKNPA
RNCRDLKFCHPELNSGEYWIDPNQGCKMDAIKAYCNMENWXDMLNAIPAACHVKNWWTSS
GAEKKHIXFGESMNGGFQFSYGDPELPEDVSDVQMAFLRLLSSRASQNITYHCKNSIAYM
DQASGNXKKALKLMSSTESEFKAEGNSKFTYAVLEDGCTKHTGEWGKTVFEYRTRKTMRL
PVVDIAPMDIGGPDQEFGVDIGPVCFL
NT seq
4404 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaaaagtaacttggctcattcttgcagtgtttcaaccctcaatt
actttggcacaacaagatgttataggggcatgtacacatcttgggcaagtgtatgctgac
agggatgtttggaaaccagaaccatgccaaatctgtgtgtgcgactcaggatctgttctc
tgtgatgacatcatctgtgatgatcaggaattagactgtcccaacccagagattccattt
ggagagtgttgtcctgtttgtccacagctaacgtcacctcctgaaagacctactagtcct
accaatggtgttgtccgaggcccaaaaggagacccgggttctcctggaactcctggcaga
cctggaacacctggctcccctggacaaccaggcagtcccggctctcctggccagcctgga
gtctgtcagtcatgtccctctataaatggaggaaatttttctcctcagtatgactcctat
gataccaaggctggtggtggtggacccatatatccacctgttattggtggtttaggagct
cccggcccacctggcctgcctggcccagctggtcaaccaggcccccccggtactcatgga
taccaaggttcccctggtgagcctggacaacctggcccttctggacctccaggaccccca
ggattagtaggcccagcgtgttcctcaggaaagatgtaaggagaacctggaagaccaggc
agaactggtgagcgtggattacctggacctgcgggccacaaaggaccccctggtatgcct
ggattcaatggaatgaaaggtcacagaggctttgatggaagagatggagccaaaggtgat
agtggtgctcctggtctgaagggtgaaaatggtcttcctggagaaaatggatcacctggg
ccaatgggtccaagaggtccagctggtgaaagagggagaccaggatctcctggttctgct
ggtgcccgtggtaatgatggtactccaggaacatctggacaacctggtccccctggccct
ccaggaactgcaggatttccaggctctccaggtgctaagggtgaagctggtgctcctggt
tccgcaggctctgatggtacccctggacaaagaggagaacctggtccacaaggtcatgct
ggtgcagctggttctcctggcaatcccggaagagatggaaacccaggtggtaaaggtgaa
acgggccctagtggtattcctggtgctcctgggttgagtggtgcccgtggccctcctggt
ccctcaggtatcaatggaattcctggacaaagaggcccgccaggtgaacctggtaagaac
ggtgcaaaaggagagccaggctcacgaggagagcgtggtgaaaatggtattccaggtgct
gctggtcctcctggtgaagaaggcaaaaagggtgctaatggtgagccaggcacaaatggt
gtacctggaacaccaggagaaaggggtaccccaggttcccgtggcatacccggtagtaat
ggacttccaggagaaaagggtcctgctggtgaacgtggtggtccaggcattgcaggtcca
agaggagctccaggagaacctggacgcgatggtggccctggtcttccaggaatgagaggt
ttaacaggaagtccaggaagcccaggacatgatggcaaacccggccctccaggtaatcag
ggagaatctggccgacctggtcctccaggccaatcaggtccacgaggtcaaccaggtgtg
atgggtttcccaggtcctaagggtaatgagggtgcgccgggtaagaatggagaaagaggt
tcccctggaccccctggcacacagggtcttcctggaaagagtggtgatgtcggcatccaa
ggtcctccaggaatcgctggtcctcctggtgaaaaaggagaggcgggatctccaggtcca
tctggcttccagggattacccggtactgcaggcccacctggagagagtggaaagcctgga
gaaccaggacaaagaggtgaaaatggagcccctggactcccaggtactaagggtgaaaat
ggtctcccaggtgaacgtggtccacaaggtgctcaaggttcccctggagcaagaggtgga
acaggtcctcctggcccagaaggtggcaagggtcctgctggtgcacctggcccccccggt
ggtgcagggccacctggtttgcaaggaatgcctggagagagaggaggtaacggaaatcct
ggacccaaaggagagaagggagagcccggtggcagaggtggtgatggcttccctgggaaa
gatggaccaaggggttctgcaggtcccattgggcccccaggtccagctggcccacatgga
gataagggagaacctggttcagctggaccccctggtcctacaggtgcccgtggtggtcct
ggtgatcgaggtgaacagggcccccctgggcctgccggcttccctggagcccccggacaa
aatggggaacctggtggaaaaggagagagaggccctggtggtgaaagaggtgagcctggt
cccgcaggagctgcaggtcctcaaggaggccctggtgcaccaggtccagctggttcccaa
ggagcaaaaggagagcgtggtgttccaggcagccctggttcatctggtttcccaggtgct
agaggcatgcctggtcctcctggtaataatggcaatccagggccacctggtaatgttgga
gctcctggaaaggatggtggtcctggtccggcaggtagctctggcncggctggtagccct
ggaagtgctggtcctaaaggtgagcctggccaaccaggtgaaaaaggttcaccaggttca
agaggagaaataggtccaccaggtagtccaggcccctcaggtatagttggtcaacgtggt
attgtgggaccaccaggccttgctggcagaccaggtgctcctggcatacctggctcaaag
ggtgaagatggtaaaccaggcagcaatggtaacccaggagaacgtggagctccaggtcta
caaggtcctcctggtctaagtggctcagctggagaatctggcagagatggtaaccctgga
tcagatggcttgcctggtcgtgatggatccccaggacccaagggcgatcgtggtgaaaat
ggtggtccaggtttacctggtgcctctggtcatcctgggcccccagggaatgttngtcca
gctggaaaaacaggtgaaagaggacatccgggtccttctggtcccgttggccctgccggt
cctgctgtgctcgtggtgctccaggtacccaagggccctcgtggtgacaaaggtgaaact
ggtgagcgtggcagcaatggcattaagggtcatagaggatttcctgttaacccatgttcc
cctggtccccctggtcctctgggtccacaaggtgcaaatggaagtccaggagctatggga
gcgagagtaaggtcccctggcccagctggtcctcccggaaaggatggtacgagtggttat
ccaggtcccataggtcctccaggccctcgtggtaatcgaggtgaaagtgggtctgcgggt
tcacctggccacccaggtcccgcgggtccccctggacctcctgggnctcctggtccatgc
tgtggggaggtgatggcattggtggtttaactggtgaaaaaaggaccatcatcatactac
tatggagaccagccatctgaaaacaaggtcaatatgaatgacatcttatcttcaatgaag
tcaattaacaaccaaattgaaaacatcgttagccctgacggctcccggaagaacccagct
cgtaactgcagagacctgaaattctgccatcctgaactcaacagcggagagtactggatt
gatcctaaccaaggttgcaagatggatgctataaaagcatactgtaatatggaaaactgg
tgagacatgctcaatgctatcccagcagcgtgccacgtaaaaaactggtggaccagttca
ggagctgaaaagaaacacatcntgtttggagagtctatgaatggtggcttccagttcagc
tatggagatccagagcttccagaagacgtttcagatgtgcagatggcattccttagattg
ctctcaagccgtgcctctcagaatatcacttatcactgcaagaacagcattgcttacatg
gatcaggccagtggaaatngtaagaaagctctgaaactgatgagttccacagagagcgag
ttcaaggctgaaggaaacagcaaattcacatatgccgttctggaagatggctgtactaaa
cacactggagaatggggtaaaacagtctttgaatacagaacacggaagacaatgaggttg
cctgtggtggatattgctcccatggatattggtggtcctgatcaggaatttggtgtggac
attggcccagtctgtttcttataa
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