Dermochelys coriacea (leatherback sea turtle): 119863421
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Entry
119863421 CDS
T09064
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X3
KO
K06823
collagen type XVIII alpha
Organism
dcc
Dermochelys coriacea (leatherback sea turtle)
Brite
KEGG Orthology (KO) [BR:
dcc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dcc04147
]
119863421 (COL18A1)
00535 Proteoglycans [BR:
dcc00535
]
119863421 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
dcc00536
]
119863421 (COL18A1)
Exosome [BR:
dcc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
119863421 (COL18A1)
Proteoglycans [BR:
dcc00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
119863421 (COL18A1)
Glycosaminoglycan binding proteins [BR:
dcc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119863421 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
119863421
NCBI-ProteinID:
XP_038277787
LinkDB
All DBs
Position
11:complement(76800683..77041831)
Genome browser
AA seq
1561 aa
AA seq
DB search
MAPAEQRLCLLLLLICCCSLVEAQFFDWLWGSQKTPKVTTLPPTESPATEGQTAEPLISP
VAITTPVPVPATVQPGDQVWSTLPVTRQAPAADTAVPALAPPSVSQDKGENIAGVGAEIL
DVAEGIRSLVQLWDEGTTRKTGNAGEPTAAAPQTTTHTSLAAASSVTGLASLGNMTANST
GDGHGLLGTRQPEASLPMPTGPPPAWNRSWALLQKPAAAPPEHFSTEVSLLQLIGDPPPE
QITKVNGPDNTLAYVFGPDANTGQVARYHLPSPFYRDFSLLFHVQPTTDKAGVLFAITDA
SQTVIYVGVKLSAVQHRKQQIIFYYTEPGSESSYAAATFSVPSLANEWSRFAISVEDDEV
VLYLNCEEFHRVRFERSPDEMELEDGSGLFVAQAGGADPDKYQGVIADLKVTGDRQAADL
QCEEQDEDTDMASGDFGSGIEEGPHLSGRERGTPAVSRLPEPPPVTSPPTAGETAEKVSV
GSQLQTKQIQVEGPQQVSTAARVGPKGEKGVPGEKGERGPKGDSGTGVVLAGGSTKGDKG
DKGDLGVKGSAGFGYPGSKGQKGEPGAQGSPGPPGSTVQRLDGSVVEQVAGPPGPTGPPG
LPGKNGLPGKDGEPGDPGEDGKPGDVGPQGFPGTPGEPGLKGQKGEPGVGARGPPGLPGP
PGTPGLSSKQDKLTFIDMEGSGFGGDLESFRGPRGPPGPPGPPGVPGLPGEPGRFGMNST
ELPGPPGLPGRAGIPGAKGLPGPAGPPGENGSAGQPGLRGERGDPGELGLPGAPGPKGGK
GEMGLAGAPGETGLAGLPGPMGPRGPPGPPGPAGPPGPGYEVGFGDMEGSGMPFLSTLPG
ERGPEGLQGPPGLPGLKGDTGSPGLPGLPGQKGDHGAPGVDGRPGLEGFPGPQGPKGDKG
SQGSKGEQGQDGVGSPGPPGLPGPPGQVIYASGEEKALAGLPGPEGRQGQAGFPGPVGPK
GDSGVPGFPGTPGPKGEKGEPGAIIGPDGTGISAGTKGDKGEQGLVGPMGPAGPHGRPGQ
KGEIGFPGRPGRPSMNGLKGEKGDPGGLGLQGPPGLPGPPGAPGSVVSIYDNNAFSESGL
PGPPGLPGYQGAPGQKGERGDTGAPGPPGQFPYDLNEFGSTFRGEKGDLGDPGLKGEKGE
PGGGGLYGPSVSGPPGPQGYPGLPGPKGDSIRGLPGPPGPQGPPGIGYEGRQGPPGPPGP
PGPPSFPGPHRQTVSIPGPPGPPGPPGPPGTSGSLTSSGQLRILPSYQSMLSMAQEVPEG
WLVFVQDREELYVRVRSGFRRVRLEEHTSVSSPGLDNEVYDKPPSVHYSHGGTASSDFLH
PRREHSPSSTARPWRADDSIANHHRLPDHSPHSAQPQQELLDSFSSHRRGESAPSAGHAH
HDFQPALHLVALNAPLSGSMRGIRGADFQCFQQARAVGLMGTFRAFLSSRLQDLYSIVRR
ADRSGVPIVNLRDEVLFNNWEALFSGTEAQFRAGARILSFDGRDVLRDSAWPQKNVWHGS
DAKGRRLTESYCETWRTDDSVVMGQASSLASGKLLEQKVSSCQNAFIVLCIENSFMTSSK
K
NT seq
4686 nt
NT seq
+upstream
nt +downstream
nt
atggctccagctgagcagcgtctgtgtctcctgctcttgctaatctgctgctgctccttg
gtggaggcacagttttttgactggctctgggggagccaaaaaacccccaaggtaacgacc
ctgccccccacagagagccccgctacggagggacagacggcggaaccgcttatctctcct
gtggccatcacaacaccggtgcctgtgccggcgaccgtgcagccaggggaccaagtatgg
agcactctcccagtcacgcggcaggcaccagccgcggacactgctgtccccgctctggca
ccaccttccgtgtcccaggacaagggggagaacatcgcgggggtgggggctgagatcctg
gacgtagcagagggcatcaggagcctggtccagctgtgggatgaagggaccacccggaag
actgggaacgcaggggagcccacagctgctgcacctcagacaaccactcacaccagcctg
gctgctgcaagctctgtaacggggctggccagccttgggaacatgactgccaactcgaca
ggggatggccacggcctgctggggaccaggcagccagaggcttcgcttcccatgccaaca
ggacctccgcctgcctggaacaggtcatgggcgctcttacagaagcctgcagcggctcct
ccagaacatttcagcacagaagtcagtcttttgcagctgattggagatcccccaccggag
caaataaccaaagtcaatggccctgacaacactctcgcctatgtcttcgggccagatgcc
aacaccggtcaagtggcccggtaccacctgcctagccccttttatagagacttctcgctc
cttttccatgttcagcccaccaccgacaaggctggtgtactctttgccatcacagatgcc
tcacagacggtcatctacgtcggggtgaagctctccgccgtgcagcacagaaagcaacag
atcatcttctactacacggagccgggctccgagagctcgtatgcagctgcaactttctct
gtgccttccctggcgaacgagtggtctcgctttgccatcagcgtggaggatgacgaggtg
gttctgtacctgaactgtgaggagtttcaccgggttcgctttgagcgctctcccgatgag
atggaactggaggatgggtctgggctctttgtggctcaggctggaggggctgatccagat
aaataccagggggtgattgcagatctgaaagtgacaggtgatcgccaggccgctgatctc
cagtgtgaggaacaggacgaggatacggatatggcgtctggagattttggaagtggaatt
gaagaagggccccacctatcaggaagggagcgggggaccccagctgtgtcgcggctcccg
gaacctcccccggtcacttctccccccaccgctggggagacagcggagaaagtgagcgtg
ggctctcagctgcaaaccaagcaaatccaagtggaaggtccccagcaagtttctacagca
gccagggttggtccaaaaggtgaaaagggggtcccaggagagaaaggtgaacgtggccca
aaaggggactctggaaccggcgtggttctagcaggcggcagcaccaaaggtgacaaggga
gataaaggagacctgggtgttaagggaagtgcaggatttgggtatcccggctcaaagggc
cagaaaggggagccaggtgcccagggatctcctgggccccctggctctacggtgcagcgt
ctggacggctctgtggtggagcaggtcgccgggcctccaggaccaacagggcccccagga
ctgcccggcaaaaacggcctccctggcaaagatggagagcctggtgatcctggtgaagac
gggaaacctggtgatgttgggccccagggattccctggaactcctggggagcctggcctc
aaggggcagaagggtgagcctggagtcggcgcaagaggcccccctggactgcccggaccg
cccgggacaccgggcctctcttccaaacaggacaagctgacgttcatcgacatggaaggc
tctgggtttggaggcgatctggaaagcttccggggcccccgaggcccaccagggcccccc
ggacctcctggggtgcctggcctgccaggagagccaggaagatttgggatgaacagcact
gagctgccaggaccccccggcctgccaggcagagctggcatccccggagccaaaggccta
ccaggtcctgcgggtcctccaggagaaaatggatctgctggccagcctgggcttcgagga
gaacggggggacccaggcgagcttggcctccccggagctcctggacccaagggcggtaag
ggcgagatggggctggccggagccccaggggaaaccgggctggcaggccttcctggacct
atgggaccacgaggaccaccaggtcccccaggccctgctggacctcctgggccaggctac
gaggttggatttggcgacatggaaggctcggggatgcctttcctttctaccttacctgga
gaacgcggacccgaagggctgcaggggccaccgggactccccggactcaagggggacact
ggcagccctgggctgcctggcttgccaggacaaaagggggaccacggggctccaggtgtg
gatgggcgcccagggctggaaggtttcccaggacctcagggacccaagggtgacaagggc
agccaggggtctaagggtgaacaaggccaagatggagtgggatccccaggcccccctggg
ctccctggacccccggggcaggtcatctatgcgtcgggtgaagagaaagcattagctggt
ttgccaggccctgagggcagacaaggtcaagctggcttcccgggcccagtgggacctaaa
ggagactcaggagtgccaggtttcccaggtactccaggaccaaagggtgagaaaggagag
cctggagcaatcatcggcccagatgggacgggtatctcggccggcacgaaaggagacaag
ggtgagcagggactcgtgggacccatgggcccagcaggcccgcatggacgacctggacag
aagggggaaatcggctttcctggcagaccgggtcgtcccagcatgaacgggctgaagggc
gagaagggggaccccggagggctcggcttgcagggtccgccgggtctccccgggccccca
ggtgcccctggcagtgtagtgtccatctacgacaataacgcatttagtgagtcgggcctt
cccggccctccaggattgcctggctaccagggtgccccaggacaaaagggtgaacgaggt
gacacaggcgccccagggcccccaggccagttcccctatgatctcaacgaatttggttcg
accttccggggtgaaaaaggagacctgggggaccctggactgaaaggagaaaagggggag
cccggcgggggaggactgtacggaccaagcgtctctggacctccaggtcctcagggctat
cctggccttccgggtcccaagggggacagcattagaggcctgcctggccccccagggcct
cagggcccccctggcattgggtacgaggggcggcagggcccccctggtccccctgggcct
cccgggcccccctcctttccaggaccccacagacaaactgtcagcatccctggcccacct
gggcctccagggccaccaggacctccagggaccagcgggtcgttgacctcctccgggcag
ctgcggatcttgccatcgtatcagtccatgctgagcatggcccaggaggtgcctgagggc
tggctggtcttcgtacaggacagagaagagctgtacgtccgggtgcggagcggcttccgg
agagtccggctggaggaacacacttccgtctccagcccggggctggacaacgaagtgtac
gacaagccgccgagtgtccactactcgcatggtggcactgcctcctccgacttcctgcac
ccgcgccgagagcacagcccctcctccacagcccggccctggcgagcagacgacagcatc
gccaaccaccaccgccttcccgaccactcgccccacagtgcccagccccagcaagagctg
ttggacagcttctcctcccaccgccggggcgagagtgccccctctgcgggtcacgcgcac
cacgacttccagcccgccctccatctggtggcactgaacgccccgctgagcggcagcatg
cgcggcatccggggagcagacttccagtgcttccagcaggcccgggcagtcgggctgatg
ggcacgttccgagccttcctgtcctcccggctgcaagacctgtacagcatcgtgcgcagg
gccgacaggagcggggtgcccattgtcaacctccgggatgaagtgctgtttaacaactgg
gaggcgctgttctcgggcacggaggctcagttccgagctggcgctcgcatcctctcgttc
gacggaagagatgtcctgagagactctgcgtggcctcagaagaacgtgtggcacggctct
gacgccaagggccgccggctcacagagagctactgcgagacatggaggacggacgacagc
gtggtgatgggccaggcctcctcgctggcctcgggcaagctcctggagcagaaggtgagc
agctgccagaacgccttcatcgtcctgtgtatcgagaacagcttcatgacctcttccaaa
aagtga
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integrated database retrieval system
