Dietzia cinnamea: VYL96_02915
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Entry
VYL96_02915 CDS
T10417
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
dcd Dietzia cinnamea
Brite
KEGG Orthology (KO) [BR:
dcd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcd03019
]
VYL96_02915 (hrpB)
Enzymes [BR:
dcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VYL96_02915 (hrpB)
Messenger RNA biogenesis [BR:
dcd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VYL96_02915 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
Cas3-like_C_2
AAA_30
HA2_N
AAA_11
AAA_19
ParA
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WVF64051
LinkDB
All DBs
Position
complement(640335..642914)
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AA seq
859 aa
AA seq
DB search
MSAFDLDRIGRGLPFARALPALRDALATAGTAVVQAPPGTGKTTLVPPAVAVADGVSGRV
IVTQPRRVAARSAARRLAALTGTGPGGVVGYTVRGDSRVGRDALVEFVTPGVLVRRLIAD
PDLPGVGAVVLDEVHERDVESDLAFALLCEVRQLRDDLPVVAMSATVEAGRFARLLGGGT
AAEEPGAGSAAPVVDVPAESHPLEIRYAPPPTARLAARGVADGFLDHVAAVTAHEVTVSG
VDALVFLPGVREIERVVRSLAARLGDAVEVLPLHGGLDAAAQDRAVSGSRSRSGEGDTAL
PRIVVSTDLAESSLTVAGVRLVVDACLSREPRRDIARDMTGLVTVSASRDSCVQRAGRAA
RLGPGLAVRCLTEQEYAGLAAHRTAAIATSDLTTFALDVACWGAPRAEGLALPDQPPAGE
ITRAESVLRGLGALDADGRATDRGRDLARVPADPRHARALLDGAGLVGAEVAAEVVALLA
SGRRSPGGDLTADLRALRAGRAPDAATWEREARRLERMVSGRSGGADPAGMESDDAVGTV
VALAHPDRIARRRGDQYTFTSGTGAVLPPGSGLAGHDWLAVAEVGRAAGRAAGEAGAVIR
AAAPLDREGAERAASHLLDDDETAVFDRGAVTGRRIRRLGAIELSSTPVRPSPAAAREAV
SAAIRARGFAALDPDDDTVRLWCRLALVRRELGAPWPDVSAAGLTGRLDDWLAAEIDALA
HGSRLAGRDLGPALRRLLPWPEAGRLDELVPDRLEVPSSSSYRVDYPAVGTDDPPVLAVK
LQECFGWTASPRICDGRVPVTVHLLSPAGRPLAVTRDLAFFWREAYPAVRAEMRGRYPRH
PWPEDPMTAEPTRRTNRRR
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcgttcgatctcgaccgcatcggccgcggtctgccgttcgcccgggctcttccg
gccctgcgggacgccctcgccacggcgggtaccgcggtggtgcaggcaccgcccggcacc
ggcaagacgaccctcgtcccgcccgcggtcgccgtcgccgacggggtgtcgggacgggtg
atcgtcacccagccccgtcgggtcgccgcccgctcggcggcgcggcggctggctgcactc
acggggaccggacccgggggcgtggtgggctacacggtccgtggggactcgcgcgtcggc
agggacgccctcgtcgagttcgtcactccgggggtactggtgcgtcggttgatcgccgat
cccgacctgcccggcgtcggggccgtggtgctcgacgaggtccacgaacgcgacgtcgag
tccgacctggccttcgcactgctgtgtgaggtgcggcagctgcgcgacgacctgccggtg
gtggcgatgtccgcgacggtcgaggcgggacgcttcgcccggctgctcggcggcgggacc
gcggccgaggagcccggggcgggttccgcggcgcccgtcgtcgacgtgcctgcggaatcg
caccccctggagatccggtacgccccaccgccgaccgcccgcctggccgcccgcggggtc
gccgacggctttctcgatcacgtggcggcggtgacggcacacgaggtgaccgtgagcggg
gtcgacgccctggtgttcctgccgggtgtgcgcgagatcgagcgcgtggtgcggtcgctc
gccgcgcggctgggggacgcggtcgaggttctacctctgcacggcgggctggacgccgcc
gcccaggaccgggcggtgtccggttcccggagccggagcggcgaaggcgacacggcgctg
ccgcggatcgtggtgtcgaccgacctggcggagtcctcactgactgtggccggggtgcgg
ctggtggtggacgcgtgcctgagccgcgagccgcggcgagacatcgcacgggacatgacg
gggctggtgacggtgtcggcgtcgcgcgactcgtgcgtgcagcgcgcgggccgcgccgcc
cgcctcggccccgggctcgcggtgcgctgcctgaccgagcaggagtacgcgggactggcc
gcccaccgcacggcggcgatcgcgacgtcggacctgacgaccttcgcgctggacgtggcc
tgctggggcgcgccccgggcggagggcctggcgctgcccgatcagccgccggccggggag
atcacccgcgccgagagcgtgttgcgcgggctcggggcgctcgacgccgacggacgcgcc
acggaccgcgggcgcgacctcgcgcgggtgcccgccgatccccgtcacgcccgcgcactg
ctggacggcgcgggactcgtcggtgcggaggtggccgccgaggtggtcgcgctgctcgcg
tcgggtcgccgttcccccggcggcgacctgacggcggatctgcgtgcactgcgcgcgggg
cgggcgccggacgcggcgacgtgggagcgcgaggcccggcgactggagcggatggtcagc
ggaagatccggcggcgcggacccggccgggatggagtcggacgacgccgtcgggacggtc
gtggcgctcgcccacccggaccgcatcgcgcgccgacgcggcgaccagtacaccttcacc
tccgggaccggcgcggtgttgccgccgggttccgggctggcgggccacgactggctcgcc
gtcgccgaggtgggacgtgcggccgggcgcgcggccggcgaggccggcgcggtgatccgc
gccgccgccccgttggaccgggagggcgcggagcgtgcggcctcgcacctcctcgacgac
gacgagacggccgtcttcgaccggggcgcggtcacgggtcgacgcatccgccggctcggg
gcgatcgaactctcctccactccggtgcggccctcccccgcggccgcccgggaggcggtg
tcggcggcgatccgggcccgcgggttcgccgcactcgatcccgacgacgacaccgtccgc
ctgtggtgccgcctcgcgctggtacgccgcgagctcggcgcgccgtggccggacgtgtcc
gcggcaggactgaccggtcggctggacgactggctcgccgcggagatcgacgccctcgcc
cacggctcccgcttggcgggacgggacctcggcccggccctacgacgcctgctgccgtgg
cccgaggccggtcggctcgacgagctggtgcccgaccgcctggaggtgccctcctcgtcg
tcgtaccgcgtcgactaccccgccgtcgggaccgacgacccaccggtgctcgcagtgaaa
ctgcaggagtgcttcggctggaccgcctcgccgcgcatctgtgacggccgcgtcccggtg
acggtccacctgctctcgcccgccggacggccgctcgcggtgacgcgcgatctcgcattc
ttctggcgggaggcctaccccgcggtccgggccgagatgcgcggccgttatccgcggcac
ccgtggccggaggacccgatgacggccgagccgacgcggcgcaccaaccggcgccgctga
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