Dietzia cinnamea: VYL96_05560
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Entry
VYL96_05560 CDS
T10417
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dcd Dietzia cinnamea
Pathway
dcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VYL96_05560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcd03019
]
VYL96_05560
03400 DNA repair and recombination proteins [BR:
dcd03400
]
VYL96_05560
Enzymes [BR:
dcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VYL96_05560
Messenger RNA biogenesis [BR:
dcd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VYL96_05560
DNA repair and recombination proteins [BR:
dcd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VYL96_05560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
HEM4
GDH_ACT1
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
WVF64527
LinkDB
All DBs
Position
complement(1215841..1218018)
Genome browser
AA seq
725 aa
AA seq
DB search
MTSPADRPHPDSPTAADPASLRARADELLGALAGPGARLREDQWTAIEALVADRRRALVV
QRTGWGKSAVYFIAARLLRELGSGPTVIVSPLLALMRNQVEAAARAGVRAATINSANMTE
WDEVRASVRAGEVDVLLVSPERLNNPDFRDTVLPALAADAGLVVVDEAHCVSDWGHDFRP
DYRRIRTLLADLPEGVPVLATTATANDRVVRDVAQQLGVGVSGLAQQPSAADDSAASDTL
VLRGGLDRESLRLSVVTIDDSETRAAWLVENLDALPGSGIIYCLTVAAAEDMAELLTSAG
HRVSAYTGRTDSGEREELERALLDNEVKALVATSALGMGFDKPDLGFVVHLGAPPSPISY
YQQIGRAGRAADRAEVVLLPGPEDRAIWNHFASLAFPPEDVVRRVLDALEPDRPQSTQAL
EPAVDLGRTRLEMVLKVLDVDGAVQRVRGGWVSTGRPWHYHAERYAGLAEARQAEQQAMI
AYERTDSCRMEFLRAQLDDPTLDPASPGCGRCDNCTGERRTTDVDSGALTRAREALERPG
VVLPPRRQWPTGLAKLDVPLKGKIADGPAEGRALARLTDLGLGQKLRALLAEPDQDAPEW
LARACVPVLREWGWSERPTGVVALVTGEHPQLVASLAAALARMGRMEPLGELTRDPALPP
VTAQNSAYRVAQLWGTFSGPATAPDGPVLLVTDVLGTGWTVTEAARHLRSSGASAVLPLA
VAAAG
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgccggcggaccgtccccatcccgacagcccgaccgcagcggatcccgcgtcc
ctgcgggcgcgcgccgacgagctgctcggggccctcgcgggcccgggtgcgcgactgcgc
gaggaccagtggacggcgatcgaggcgctggtggccgaccgtcggcgcgcactggtggtc
caacgcaccggctggggcaagtccgcggtgtacttcatcgccgcgcggctgctccgcgag
ctcggctccggtcccacggtgatcgtctcgccgctgttggcgctcatgcgcaaccaggtc
gaggcggcggcccgggccggggtgcgggcggcgaccatcaactcggccaacatgaccgag
tgggacgaggtgcgcgcgtccgtccgggccggcgaggtggacgtgctgttggtgagcccc
gagcggctgaacaacccggatttccgggacaccgtgctgccggcgctcgccgcggacgcc
gggctggtcgtggtcgacgaggcccactgtgtctcggactggggtcacgacttccggccc
gactaccgtcggatccgcaccctcctcgccgacctgccggagggggtgccggtcctggcg
accaccgccacggccaacgaccgggtggtccgcgacgtcgcccagcagctgggtgtgggc
gtgagcggtctcgcgcagcagccttcggccgccgacgactccgccgcctcggacaccctc
gtcctgcgcggcggcctcgaccgtgagtcgctgcgtctgtcggtggtgacgatcgacgac
tccgagacgcgcgcggcctggctggtggagaatctcgacgcgctgcccggcagcgggatc
atctactgcctcaccgtcgccgccgcggaggacatggccgagctgctcacctcggccggg
caccgcgtcagcgcctacacgggacgcaccgactccggcgagcgggaggagctggagcgt
gccctgttggacaacgaggtcaaggcgctggtcgccacgtccgcgctgggaatgggtttc
gacaagcccgacctggggttcgtcgtccacctgggggcgccgccttctcccatctcgtac
taccagcagatcggccgcgccgggcgcgcggccgacagagcggaggtcgtcctgctgccg
gggcccgaggaccgggccatctggaaccacttcgcctcgctggccttcccgccggaggac
gtcgtccggcgggtcctcgacgcgctggagcccgaccgtccgcagtcgacgcaggcgctg
gagccggccgtcgacctgggccggacccggctggagatggtgctcaaggtcctcgacgtg
gacggcgcggtccagcgggtgcgcggcggctgggtctccaccgggcggccgtggcactac
cacgccgagcgctacgcgggtctggcggaggctcggcaggccgagcagcaggcgatgatc
gcctacgagcgcaccgactcgtgccgcatggagttcctgcgcgcgcagctcgacgacccc
accctcgacccggcgtcgcccgggtgcggccgctgtgacaactgcaccggcgagcgccgc
accaccgacgtcgattccggcgcgctgacccgggcgcgcgaggcgctggagcggcccggt
gtggtgcttccgccccgccggcagtggcccacgggcctggccaagctcgacgtaccgctc
aagggcaagatcgccgacggtcccgccgagggacgcgctctcgcgcgcctcaccgacctc
ggcctggggcagaagcttcgggcgctgctcgccgagcccgatcaggacgcgcccgagtgg
ctggcacgggcgtgcgtaccggtcctgcgggagtggggctggtccgagcggcccaccggg
gtcgtcgccctggtcaccggggagcacccgcagctcgtcgccagcctcgccgccgcgctg
gcgcggatgggacgtatggagccgctcggcgagctcacccgcgacccggcgctgccgccg
gtgacggcgcagaactcggcctaccgcgtggcccagctgtggggcacgttctccggcccg
gccactgcgccggacggtccggtcctgctggtcaccgatgttctaggcacgggttggacg
gtcaccgaggcggcccggcacctgcgctcctccggcgcctccgcggttctgcccctggcc
gtcgccgccgcgggttag
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