Dietzia cinnamea: VYL96_06405
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Entry
VYL96_06405 CDS
T10417
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dcd Dietzia cinnamea
Pathway
dcd03030
DNA replication
dcd03430
Mismatch repair
dcd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dcd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VYL96_06405 (dnaE)
03430 Mismatch repair
VYL96_06405 (dnaE)
03440 Homologous recombination
VYL96_06405 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dcd03032
]
VYL96_06405 (dnaE)
03400 DNA repair and recombination proteins [BR:
dcd03400
]
VYL96_06405 (dnaE)
Enzymes [BR:
dcd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VYL96_06405 (dnaE)
DNA replication proteins [BR:
dcd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VYL96_06405 (dnaE)
DNA repair and recombination proteins [BR:
dcd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VYL96_06405 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
WVF64682
LinkDB
All DBs
Position
1403933..1407478
Genome browser
AA seq
1181 aa
AA seq
DB search
MGDQFVHLHNHTEFSMLDGMAQIDPLFAEASRLGMPAVGMTDHGNMYGASDFYKQAKKTG
VKPIIGIEAYVAPESRFEKKRILWGEKHQKSDDVAGSGAYTHMTMVAENATGLRNLFRLS
SLASYEGQLGKWARMDAEILAEYSEGIIATSGCPSGEIQTRLRLGHNKEAYEAAEKWQSI
FGKDNFFLELMDHGIDIERRVREDLLKLGRDLGMPPLVTNDCHYVTREQAHAHEAMLCVQ
TGKTLADENRFKFDGDGYYLKSAQEMRAQWDSEVPGACDNTLWIAERVQPYDDIWTPRDR
MPKFPVPEGETEDTWLAKEVHKGLQWRFPDGVPQEYIDRANFELEVIKGKGYPGYFLVVG
DLIEHARSIGIKVGPGRGSAAGALVAYALKITNIDPIEHGLLFERFLNPERPSAPDIDID
FDDRRRGEMIRYASDKWGADKIAQVITFGTIKTKAAIKDAARVNFGQPGYAIADRITKAL
PPAIMAKDIPLSGITDPKHERYGEAAEVRQLLETDPDVKRIYDTARGLEGMVRQAGVHAC
AVIMSSEPLLDVIPMWKRAQDGAIITGWDYPSCEDIGLLKMDFLGLRNLTVIGDCLENIK
LNRGEEIDLDTLSTDDQATYDLLARGDTLGVFQLDSGGMRELLKRMKPTGFNDIVAALAL
YRPGPMGMGTHWNYADRKNGKQELVPIHPELEEPLKEILGETHGLIVYQEQIMAISRELA
GYTAGEADGFRKAMGKKKAEVLAAEYEKFSGGMFERGFSKEAVDALWGTIEPFASYAFNK
SHAAGYGLVSFWTGYLKANYPAEYMAALLTSVGDDKDKAALYLSNCRQMGIKVLPPSVNE
SLTNFASVGKDIRFGLGAVRNVGAQVVDSIVAAREAKGEFTDFSDYLAKIDQTACTKKVT
ESLIKAGAFDSLGHPRKGLFLVHADAVESVMSTKKAEAVGQFDLFGGGDDTAADTGFGDV
FAVRVPDEEWDTKQKLALEREMLGLYVSGHPLDGLEAALEAKTDTNIATIHEGELPHGTA
VTIGGIISGVDRRVNKNGEPWAIVTIEDFNGSVEVLFFPKTYRIAALDIAEDAVVLVKAR
INIREDRVSVFGDTLEVPDLVVGGNGAPLALTLQTRMCTIETVTALKQVLVRHPGPSDVH
LRLVNGNSSTVLRLDDQLRVETSSSLMGDLKALLGAGCLAG
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
gtgggcgatcagttcgtgcatctgcacaatcacaccgagttctcgatgctcgacgggatg
gcgcagatcgacccgctgttcgcggaggcgtcacgtctgggtatgccggccgtcgggatg
accgaccacggcaacatgtacggcgcctcggacttctacaagcaggccaagaagaccggg
gtcaagcccatcatcgggatcgaggcgtacgtcgcccccgagtcgcggttcgagaagaag
cgcatcttgtggggcgagaagcaccagaagagcgacgacgtcgccggctccggcgcctac
acgcacatgacgatggtcgccgagaacgccaccggcctgcgcaacctgttccggctgtcc
tcgctcgcctcgtacgaggggcagctgggcaagtgggcgcgcatggacgcggagatcctc
gccgagtactccgaggggatcatcgccacctccggctgcccctccggcgagatccagacc
cgcctgcgcctcggccacaacaaggaggcctacgaggccgccgagaagtggcagtcgatc
ttcggcaaggacaacttctttctcgagctcatggaccacgggatcgacatcgagcgtcgg
gtccgcgaggacctcctcaagctcggtcgggacctgggcatgccgccgctcgtgaccaac
gactgccactacgtcacccgcgagcaggcccacgctcacgaggccatgctctgcgtccag
accggtaagaccctcgccgacgagaaccgcttcaagttcgacggggacggctactacctc
aagtccgcccaggagatgcgcgcccagtgggactccgaggtcccgggcgcgtgcgacaac
accctgtggatcgccgagcgcgtccagccgtacgacgacatctggacgccgcgcgaccgg
atgcccaagttccccgtccccgagggcgagacggaggacacgtggctggccaaggaggtc
cacaagggcctgcagtggcgcttccccgacggcgtgccgcaggagtacatcgatcgcgcg
aacttcgagctcgaggtcatcaagggcaagggttaccccggttacttcctcgtggtcggc
gacctcatcgagcacgcccgctcgatcggcatcaaagtcgggcccggccgagggtccgcc
gccggcgcgctggtggcgtacgcgctgaagatcacgaacatcgaccccatcgagcacggc
ctgctgttcgagaggttcctcaaccccgagcggccgtccgcgcccgatatagatatcgac
ttcgacgaccggcgtcgcggcgagatgatccgctacgcctccgacaaatggggcgccgac
aagatcgcccaggtcatcaccttcggcaccatcaagaccaaggccgccatcaaggacgcc
gcccgcgtcaacttcggccagcccgggtacgcgatcgccgaccgcatcaccaaggcgctg
ccgccggcgatcatggccaaggacatcccgctgtccggcatcaccgaccccaagcacgag
cggtacggcgaggccgccgaggtgcgccagctcctcgagaccgaccccgacgtcaagcgg
atctacgacacggcccgcggtctcgagggcatggtccgtcaggccggcgtccacgcgtgc
gcggtgatcatgtcctccgagccactgctcgacgtgatccccatgtggaagcgcgcgcag
gacggcgccatcatcaccggctgggactacccgtcgtgtgaggacatcggcctgctcaag
atggacttcctgggcctgcgcaacctcacggtgatcggcgactgcctggagaacatcaag
ctcaaccgcggcgaggagatcgacctcgacacgctgagcacggacgaccaggccacctac
gacctgctcgcccgcggtgacaccctcggcgtgttccagctcgactccggcggcatgcgc
gagctgctcaagcggatgaagcccaccggcttcaacgacatcgtcgccgccctcgccctg
taccgacccggccccatgggcatgggcacgcactggaattacgccgaccgcaagaacggc
aagcaggaactggtgccgatccaccccgagttggaggagccgctcaaggagatcctcggg
gagacccacggcctgatcgtctaccaggagcagatcatggccatctcccgcgagctcgcg
ggatacacggccggtgaggccgacggcttccgtaaggccatgggtaaaaagaaggccgag
gtcctggccgcggagtacgagaagttctcgggcggcatgttcgagcgcgggttctccaag
gaggccgtcgacgcgctgtggggcaccatcgagcccttcgcctcgtacgcgttcaacaag
tcccacgccgccggctacggtctggtgtccttctggaccggctacctcaaggccaactac
ccggccgagtacatggccgcgctgctcacctccgtcggtgacgacaaggacaaggccgcc
ctctacctgtccaactgccggcagatgggtatcaaggtgctcccgccgtcggtcaacgag
tcgctgacgaacttcgcgtccgtcggcaaggacatccggttcggcctgggcgccgtgcgc
aacgtcggcgcgcaggtcgtggactcgatcgtcgccgcccgcgaggccaagggcgagttc
accgacttctcggactacctcgccaagatcgaccagaccgcctgcaccaagaaggtcacc
gagtcgctcatcaaggccggcgccttcgactcgctcggccatccgcgtaagggcctgttc
ctggtccacgccgacgccgtggaatcggtcatgtccaccaagaaggccgaggccgtcggc
cagttcgacctcttcggtgggggagacgacaccgcggccgacaccggcttcggtgacgtg
ttcgccgtccgcgtgcccgacgaggagtgggacaccaagcagaaactggccctcgagcgc
gagatgctgggcctgtacgtctccggccacccgctcgacgggctcgaggccgcgctggag
gccaagaccgacacgaacatcgccacgatccacgagggcgaactgccccacggcaccgcc
gtgacgatcggcgggatcatctccggtgtcgaccggcgggtgaacaagaacggcgagccg
tgggcgatcgtgacgatcgaggacttcaacggcagcgtcgaggtgctgttcttccccaag
acctaccggatcgccgccctggacatcgccgaggacgcggtcgtgctggtcaaggcgagg
atcaacatccgtgaggaccgcgtgtcggtcttcggcgacaccctcgaggtgccggacctg
gtcgtcggcgggaacggcgcgccgctcgcgctgacgctgcagacgcggatgtgcaccatc
gagaccgtcaccgcgctcaagcaggtcttggtccgccaccccggcccctcggacgtccac
ctgcggttggtcaacggcaactcctcgacggtcctgcggctcgacgaccaactgcgggtc
gagacctcgtcctccctcatgggagacctcaaggcgctactcggtgccggctgcctcgcg
ggctga
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