Dietzia cinnamea: VYL96_09585
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Entry
VYL96_09585 CDS
T10417
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dcd Dietzia cinnamea
Pathway
dcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VYL96_09585 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcd03021
]
VYL96_09585 (rho)
03019 Messenger RNA biogenesis [BR:
dcd03019
]
VYL96_09585 (rho)
Transcription machinery [BR:
dcd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
VYL96_09585 (rho)
Messenger RNA biogenesis [BR:
dcd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VYL96_09585 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
WVF65118
LinkDB
All DBs
Position
complement(2078412..2080499)
Genome browser
AA seq
695 aa
AA seq
DB search
MRLPELKALAQQMGLKGLSGKRKGDLVAMIEGARGGRPAQSDAPRRAETPREAETPRQAE
APREAEATSRADAPEQADVPRREEPQAPSESPSADGAAPSTGTGRRGRGNRADTAGEKAR
NGGDGGDSAPAGDEGGSQGDGRAQGERSRREDGNRAGQRQGRGQQNRDQDTRDQQGGRND
RGNQGGRNSQGGRNDQDGQGNRNGQGNRNDQGGRNNQDGQGNRNDQGGRNNQDGQGNRSD
QGSQDGGDNGPRGDGQNRDDDGGGRGRRGRRRRERNRGGNRPAEGETEVREDDVLQPVAG
ILDVLDNYAFVRTSGYLAGNNDVYVSMNMIRRYGLRRGDAITGAVKMPRDGQSDGQHDGP
GGGQGGGRGGGQGGKNRAKFNPLARIDTVNGSPADQARQRPEFSKLTPLYPNQRLRLETE
KNIISTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAIATNNPECHLMVVLVDERP
EEVTDMQRSVKGEVIASTFDRPPSDHTQVAELAIERAKRLVELGQDVVVLLDSITRLGRA
YNNSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFE
EFKGTGNAELKLDRRIAERRVFPAVDVGPSGTRKEELLMSPEEAGIMHKLRRVLSGLDTH
QAIDLLMSQLRKTNTNYEFLLQVAKTTPTLPQDEE
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgcgactgcccgagctcaaggcactggcgcagcagatgggcctcaagggcctgtcgggt
aagcgcaagggcgacctcgtcgcgatgatcgaaggcgcgcgaggcggccgccccgctcag
tccgacgcaccgcgccgtgccgagaccccgcgcgaggcagagaccccgcgccaggcagag
gccccgcgcgaggcagaggccacgagccgggccgacgcgccggagcaggcggacgtgccc
cgccgcgaggagccgcaggcgccgtccgagtccccctcggcagatggagcggcaccgtcg
accggcacgggtcgccggggacgcggcaaccgcgcggacaccgcgggggagaaggcgcgc
aacggcggcgacggcggcgactccgcaccggcgggcgacgagggcggctcccagggcgac
ggacgggcccagggcgagcggtcgcgccgcgaggacggcaaccgcgctggtcagaggcag
ggacgcgggcagcagaaccgcgaccaggacacccgtgaccagcagggcggccgcaacgac
cgcggcaaccagggcggccggaacagccagggtggccgcaacgaccaggacggccagggc
aaccggaacggccagggcaaccggaacgaccagggcggccggaacaaccaggacggccag
ggcaaccggaacgaccagggtggccgcaacaaccaggacggccagggcaaccggtccgac
cagggcagccaggacggcggcgacaacggcccccgtggcgacggccagaaccgcgacgac
gacggcgggggccgcggtcgccgtggtcgccgccgccgcgagcgcaatcgtggcggcaac
cgcccggccgagggtgagaccgaggtgcgggaggacgacgtcctccagccggtcgccggc
atcctcgacgtcctcgacaactacgcgttcgtccgcacctccggctacctcgccggcaac
aacgacgtctacgtgtcgatgaacatgatccgtcgctacgggctgcgtcgcggtgacgcg
atcaccggcgcggtcaagatgccccgggacgggcagtccgacggtcagcacgacggtccg
ggcggtggccagggtggcggccgcggtggcggacagggcgggaagaaccgggcgaagttc
aatccgctcgcccgcatcgacacggtcaacggcagcccggcggaccaggcccgccagcgt
ccggagttctccaagctcactccgctgtaccccaaccagcggctgcggctcgagacggag
aagaacatcatctccacccgcgtgatcgacctgatcatgccgatcggcaaggggcagcgc
gccctcatcgtgtcgccgccgaaggccggtaagaccacgatcctgcagaacatcgccaac
gcgatcgccacgaacaaccctgaatgccacctcatggtcgtcctcgtagacgagcgaccg
gaggaggtcaccgacatgcagaggtcggtcaagggcgaggtcatcgcctcgaccttcgac
cgtccgccgtccgaccacacgcaggtcgccgagctcgcgatcgagcgtgcgaagcggctg
gtggagctgggccaggacgtcgtcgtcctcctcgactcgatcacgcgtctcggtcgcgcc
tacaacaactcgtccccggcctcggggcgcatcctgtccggtggtgtcgactcgaccgcc
ctatacccgcccaagcggttcctcggcgcggcacgcaacatcgagaacggcgggtccctg
acgatcatcgcgaccgcgatggtcgagaccggctcggccggtgacaccgtgatcttcgag
gagttcaagggcaccggcaacgccgagctcaagctggaccgtcggatcgccgagcgccgg
gtcttccccgccgtcgacgtcggcccctcgggcacccgcaaggaggagctgctcatgagc
cccgaggaggcgggcatcatgcacaagctccgccgggtgctctcgggtctggacacccac
caggccatcgacctgctcatgtcgcagctgcgcaagaccaacaccaactacgagttcctg
ttgcaggtggccaagacgacgcccacgctgccgcaggacgaggagtga
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