Dietzia cinnamea: VYL96_09655
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Entry
VYL96_09655 CDS
T10417
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dcd Dietzia cinnamea
Pathway
dcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VYL96_09655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcd03019
]
VYL96_09655
03009 Ribosome biogenesis [BR:
dcd03009
]
VYL96_09655
Enzymes [BR:
dcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VYL96_09655
Messenger RNA biogenesis [BR:
dcd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VYL96_09655
Ribosome biogenesis [BR:
dcd03009
]
Prokaryotic type
rRNA helicases
VYL96_09655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
WVF62197
LinkDB
All DBs
Position
complement(2098639..2100591)
Genome browser
AA seq
650 aa
AA seq
DB search
MDNNDEDRTATAGDEVDTDASTPETPVAAPAGARDDAPHDEAPAEDAAVTFADMGLAPAV
AKAVRDVGYEVPSAIQAATIPLVLEGRDVVGLAQTGTGKTAAFALPILSLIDPSVKSPQA
LILAPTRELALQVAEACVTYSAGMPQVNVLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVI
DHLKKGTLDLSGLRHLVLDEADEMLAMGFQEDVERILSDTPESTQVALFSATMPSAIRRI
SQKYLTDPTEVKVASKTSTAPTIQQRYVLVNHRDKLDALTRILEVEDFDAMIMFVRTKSA
TEELAERLRARGFSAAPINGDIPQNLRERTIEALKDGRTDILVATDVAARGLDVPRISHV
VNYDIPHDTESYIHRIGRTGRAGRSGHALLFVTPRERRLLSQIERATRQPLTEIQLPSVD
DVNEMRMAKFAQSITESLDDPNIALFRRLVEEYASEHSVSMADIAAALATQSRNSDEFLM
REPERPQRRERQDDRGGDRRDRPARNFSDGPRPSRSGRDMAQYRIAVGKRNNVKPGSIMG
ALANEAGLSGGDIGRISIRFDHSIVELPAGLPSDQLESMKGIRVGGAEIDIRPDSGAPAG
RPSSFRDDRGGKPRGGGHRRDDRRGFRRGDDDRRGGGGFRGRSGGGQDRY
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggacaacaacgacgaggaccgtaccgccaccgccggcgacgaggtcgacaccgacgcc
agcactcccgaaacgcccgtagccgcgcccgccggagcccgcgacgacgccccccacgac
gaggctcccgccgaggacgccgcggtcaccttcgcggacatggggctcgcgcccgccgtc
gcgaaggcggtccgggacgtcggctacgaggtgccgtccgccatccaggcggccaccatc
ccgctcgtcctcgagggacgggacgtcgtcgggctcgcccagaccggtaccggcaagacg
gccgcgttcgcgctgcccatcctctcgctgatcgacccgtcggtgaagagcccccaggcc
ctcatcctggcgccgacccgcgagctcgcgctccaggtcgccgaggcgtgcgtcacctat
tccgcgggcatgccccaggtgaacgtcctgcccatctacggcggtcaggcctacggtatc
cagctctcgggtctccggcggggcgcgcagatcatcgtcggcacccccgggcgggtcatc
gaccatctcaagaagggcacgcttgatctttccggcctgcggcacctcgtcctcgacgag
gcggacgaaatgctcgcgatgggcttccaggaggacgtcgagcgaatcctctcggacact
ccggagagcacccaggtcgcgctgttctcggccacgatgccgtccgcgatccgacgcatc
tcgcagaagtacctcaccgatcccaccgaggtgaaggtcgcctcgaagacgtcgacggcg
ccgaccatccagcagcgctacgtcctggtcaaccaccgtgacaagctcgacgccctgacc
cgcatcctcgaggtcgaggacttcgacgcgatgatcatgttcgtccggaccaagtcggcg
acggaggaactcgccgagcggctgcgcgcacgtggcttctccgccgccccgatcaacggc
gacatcccccagaatctccgcgagcgcaccatcgaggcgctcaaggacgggcgtaccgac
atcctcgtcgcgaccgacgtcgccgcccgcggcctcgacgtgccgcgtatcagccacgtc
gtcaactacgacatcccgcacgacaccgagtcgtacatccaccgcatcggccgcacgggt
cgcgccggccggagcgggcacgcactgctgttcgtcaccccccgcgagcgtcgactgctg
tcccagatcgagcgcgcgacccggcagccgctcacggagatccagctgcccagcgtcgac
gacgtcaacgagatgcggatggccaagttcgcgcagtcgatcaccgagagcctcgacgac
cccaacatcgcgctgttccgccggctcgtggaggagtacgcgtccgagcactcggtctcg
atggccgacatcgcggccgcactggccacccagtcccgcaactcggacgagttcctcatg
cgtgagcccgagcgtccccagcggcgtgagcggcaggacgaccgcgggggcgaccgtcgc
gaccgtcccgcgcggaacttctccgacgggccgcggccgtcgcgctcgggcagggacatg
gcccagtaccggatcgcggtgggcaagcggaacaacgtcaagcccggttccatcatgggt
gcgttggccaacgaggccggcctcagcgggggcgacatcgggcgtatctcgatccgcttc
gatcactcgatcgtggaactgcccgccggccttccctcggatcagctcgagtccatgaag
ggcatccgcgtcggcggcgctgagatcgacatccgccccgacagcggtgcgccggcgggg
cggccctcctcgttccgggacgaccgcggcgggaagccgcgcgggggcggccaccggcgc
gacgaccggcgtggtttccgccgaggggacgacgaccgtcgcggcggcggagggttccgc
gggcgttccgggggcgggcaggaccgctactga
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