Dietzia cinnamea: VYL96_10740
Help
Entry
VYL96_10740 CDS
T10417
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dcd Dietzia cinnamea
Pathway
dcd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dcd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VYL96_10740 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcd03400
]
VYL96_10740 (mfd)
Enzymes [BR:
dcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VYL96_10740 (mfd)
DNA repair and recombination proteins [BR:
dcd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VYL96_10740 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WVF62392
LinkDB
All DBs
Position
complement(2340715..2344383)
Genome browser
AA seq
1222 aa
AA seq
DB search
MTSTAPAVTSTTAALSGLAGAVISNPALADLRAGLDRDTAVVRAPESLRPFLVGALAERA
PLLVVTATERECEELADELSGMYDGEVAQFPSWETLPHERLSPAADTIGRRLEVLSAVMA
GRAPRIIVAAARSVVQPISPAAARREPVRLTRGDEVDPTELMARLAEFAYTREDMVARRG
DIAVRGGIVDVFPTTADHPLRIEFDGDEIAEIREFSVADQRSLPDGEVEQVVLYPCRELL
LDDDVRARAGQLAAEHRANPTLAELLDSLAEGIPRDGMEALTSVLVPGEMATLPMLMPDD
TRVVVCDPDKVRRRAADLASAGREFLEASWTAATMGGDAPVDSETLDLSGSGYRTFSSVR
EEATEAGRAWWQLVPPGFLTDPEDGLVVTVEAGDPPAPRGKDSEMEAMFVRLRALVGAGG
RAAMVVPGHGTVARILERLSEAEVPATAAQAGSEPADGLVSVYEAVLHAGFALTGGADGA
SGDLVVVSETDLTGNRLGSTARPKARHSKRRNQVDPLALKAGDLVVHDQHGIGRFVEMVE
RQVRGGDGSSRREYLVIEYAPGKRGAAGDRLYVPMESLGQLSRYVGGEAPTLSKMGGADW
QNTKRKARKAVREIATELVQLYAKRQSAPGRAFGPDTPWQREMEDAFPFTETVDQLSAIE
EVKADMEKSAPMDRVVVGDVGYGKTEVAVRAAFKAVQDGTQVAVLVPTTLLAQQHLATFT
ERMNGFPVTIKGLSRFTSDAEAKEILKGLADGTVDVVIGTHRLLATGVRWKNLGLVIVDE
EQRFGVEHKEHITSLRTHVDVLTMSATPIPRTLEMSLAGIREMSQILTPPEERLPVLTYV
GAYSDKHVAAAIRRELLREGQIFYVHNRVRTIDSTAARIRDLVPEARVVVAHGQMGEEQL
EQTVGGFWNREYDVLVCTTIVETGLDISNANTLIVDRSDQLGLSQMHQLRGRVGRSRERG
YAYFLYDPEKPLTETAYDRLATIAQNNDLGAGMAVAMKDLELRGAGNVLGAEQSGHIAGV
GFDLYIRLVGEAVEAYRAIADGEKVEVEEELGEIRIELPVDAFIPPDYVDGDRLRLEAYR
KLSQAREPGDIDAVVEELLDRYGPLPAEARRVVSVARLRLVAQKYRVREIVLAGSRLRVG
PLDLLDSQQMRLKRMYPAAQYRATQKTVLLPLPKAAGARAGAGGEKARDDEMLQYAADFL
TAMAGDPEGSNPVIQPETAPAR
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
gtgacctccaccgcccccgccgtcacctccacgaccgccgcgctgtccggtctggccggt
gcggtcatctccaacccggcgctggccgacctgcgcgcgggcctggaccgcgacaccgcg
gtggtgcgcgcgccggagtcgctgcgcccgttcctggtgggcgcgctggccgagcgcgcg
ccgctgctggtggtcaccgccaccgagcgcgagtgtgaggaactcgccgacgaactgtcg
gggatgtacgacggcgaggtggcgcagttcccgagctgggagacgttgccgcacgagcgt
ctgtcgccggcggccgacacgatcggtcgccgcctcgaggtgctgtccgccgtgatggcc
ggacgggcgccgaggatcatcgtcgcggcggcgcgatcggtggtgcagcccatctccccg
gcggccgcccgccgcgagcccgtgcgcctgacccggggtgacgaggtcgacccgaccgaa
ctcatggcccgcctggccgagttcgcctacacccgcgaggacatggtcgcccgccgcggc
gacatcgccgtgcgcggcggcatcgtggacgtcttcccgaccacggccgaccacccgctg
cgcatcgagttcgacggcgacgagatcgccgagatccgcgagttctccgtcgccgaccag
cgctcgctgcccgacggggaggtcgagcaggtcgtcctctacccgtgccgcgagctgctg
ctcgacgacgacgtccgcgcccgggcgggtcagctggccgccgagcaccgcgccaacccg
acgctggccgagctcctggactcgttggccgagggcatcccgcgcgacggcatggaggcc
ctgacctccgtgctcgtgccgggcgagatggccaccctgccgatgctcatgccggacgac
acccgcgtcgtggtgtgcgaccccgacaaggtgcgccgccgcgccgccgacctcgcctcg
gcgggccgggagttcctcgaggcctcgtggaccgccgcgaccatgggcggcgacgccccc
gtcgacagcgagaccctcgacctgtccggctcgggctaccgcacgttctcctccgtgcgc
gaggaggccaccgaggcgggccgcgcctggtggcagctcgtcccgcccggattcctcacc
gaccccgaggacggcctcgtggtgaccgtcgaggccggcgatccgcccgccccgcgcggc
aaggactccgagatggaggccatgttcgtgcggctgcgcgcgctcgtcggcgccggcggc
cgggccgcgatggtggtccccggccacggcaccgtggcccgcatcctggaacgcctgtcc
gaggccgaggtccccgccaccgccgcgcaggcgggatccgagcccgccgacggactcgtg
tcggtctacgaggcggtcctgcacgccgggttcgcgctcaccgggggcgccgacggggcg
tccggcgacctcgtcgtcgtctccgaaaccgacctcaccggcaaccgactcggttccacg
gcgcgccccaaggcccgccactccaagcgccgcaaccaggtcgacccgctcgccctcaag
gccggcgacctggtcgtccacgaccagcacggcatcggccggttcgtcgagatggtcgag
cggcaggtgcgcggcggcgacggctcctcgcggcgcgagtacctggtgatcgagtacgcg
cccggcaagcgcggcgcggccggcgaccggctctacgtgccgatggagtcgctcggccag
ctcagccgctacgtcggcggcgaggcaccgacgctgtccaagatgggcggtgccgactgg
cagaacaccaagcgtaaggcccgcaaggccgtccgcgagatcgccaccgagctcgtccag
ctctacgccaagcggcagtccgcgcccggccgcgccttcggccccgacactccgtggcag
cgcgagatggaggacgcgttcccgttcaccgagaccgtcgaccagctcagcgcgatcgag
gaggtcaaggcggacatggagaagtccgcccccatggaccgcgtcgtggtgggcgacgtc
ggctacggcaagaccgaggtcgccgtgcgcgccgcgttcaaggccgtccaggacggcacc
caggtcgccgtactcgtgcccacgacgctgctcgcgcagcagcacctcgcgacgttcacc
gagcgcatgaacggcttccccgtgaccatcaaggggctcagccgcttcacctcggacgcc
gaggccaaggagatcctaaagggcctggccgacgggacggtcgacgtggtgatcggtact
caccgcctgctcgccacgggtgtgcggtggaagaacctcggcctggtgatcgtggacgag
gagcagcgcttcggcgtggagcacaaggagcacatcacctccctgcgcacccacgtcgac
gtgctcaccatgtccgccacgccgattccgcgcacgctcgagatgtcgctggcgggcatc
cgcgagatgagccagatcctcaccccgcccgaggaacggctgcccgtgctcacgtacgtg
ggcgcgtactcggacaagcacgtcgccgccgccatccggcgcgagctgctgcgcgagggg
cagatcttctacgtccacaaccgggtgcggaccatcgactccaccgccgcgaggatccgg
gacctcgtgcccgaggcgcgcgtggtggtggcgcacgggcagatgggggaggagcagctc
gaacagaccgtgggcgggttctggaaccgcgagtacgacgtgctggtgtgtacgaccatc
gtcgagaccggcctggacatctccaacgccaacacgctcatcgtggaccgctccgaccag
ctgggcctgtcgcagatgcaccagctgcgcgggcgcgtgggccggtcgcgcgagcgcggg
tacgcctacttcctctacgacccggagaagccgctcaccgagaccgcctacgaccggctc
gccaccatcgcgcagaacaacgacctcggcgcgggcatggccgtggcgatgaaggacctc
gagctgcgcggcgccggcaacgtgctgggcgccgagcagtcgggccacatcgcgggcgtc
gggttcgacctctacatccgtctggtcggtgaggcggtggaggcgtaccgcgcgatcgcc
gacggcgagaaggtcgaggtcgaggaggagctcggcgagatccgcatcgaactgcccgtc
gacgcatttatcccgcccgactacgtcgacggcgaccggctgcggctcgaggcctaccgc
aagctctcgcaggcgcgcgagcccggcgacatcgacgccgtggtggaagagctgctcgac
cgctacggcccgctgccggcggaggcccgccgcgtggtgtcggtggcgcggctgcggctg
gtcgcgcagaagtaccgcgtgcgcgagatcgtcctggccgggtcgcgcctgcgcgtgggc
ccgcttgacctgctggactcgcagcagatgcggctcaagcgcatgtacccggctgcccag
taccgggccacgcagaagaccgtcctgctcccgctgccgaaggcggcaggcgcacgcgcg
ggtgcaggcggcgagaaggcccgtgacgacgagatgctccagtacgccgccgacttcctc
accgccatggccggcgacccggagggctcgaacccggtgatccagcccgagaccgcgccg
gcgcgatga
DBGET
integrated database retrieval system
