Dietzia cinnamea: VYL96_12005
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Entry
VYL96_12005 CDS
T10417
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dcd Dietzia cinnamea
Pathway
dcd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dcd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VYL96_12005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcd03021
]
VYL96_12005
03400 DNA repair and recombination proteins [BR:
dcd03400
]
VYL96_12005
Enzymes [BR:
dcd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VYL96_12005
Transcription machinery [BR:
dcd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VYL96_12005
DNA repair and recombination proteins [BR:
dcd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VYL96_12005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WVF62632
LinkDB
All DBs
Position
complement(2600936..2604895)
Genome browser
AA seq
1319 aa
AA seq
DB search
MQDVNYFDELVISLATAEDIRNWSYGEVKKPETINYRTLKPEKEGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLDKIIYFAAYVITGVDTELRHNELSTLEAQVLEERKIIEDERDSDIEARARKLEAD
LAELEAEGAKADQRRKVKDGGEKEMKKIREAAQRELDRLEEIWNTFVKLDVNQIIVDEGI
YRELEDRFGEYFSGGMGAEAIQALLENFDLEAEAESLREIIRNGKGQKKIRALKRLKVVS
AFLQSGNHPAAMVLGAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLMDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLQLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
DQVWDVLEEVIAEHPVMLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLASNNILSPASGRPLAMPRLDMVTGLYYLTRLDEGAEGAYE
PATDDAPATGVYATPAEAIMAVDLGVLDIHAPIRVRMTQQRPSAEIEAEQFPEGWTPGQE
WLAETTLGRVMFNELLPADYPFVNEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDTGF
YWATRSGVTIAMSDVLVPPAKKEILASYDTKAARLESQYDLGKITDEERKSDLVKLWQEA
ADEIGQAMEANYPDDNPIPTIVKSGAAGNMTQIRSLAGMKGLVTRPNGEFIPQPIKSSFR
EGLTVLEYFMNTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTSKGVETTI
ARPIMDAQGNSTGVLERDEHVETSTFARTLAEDAVDANGTVIVSAGTDLGDPTIEALINA
GVEKVKVRSVLTCTTGTGVCATCYGRSMATGQLVDIGEAVGIVAAQSIGEPGTQLTMRTF
HQGGVGDDITGGLPRVQELFEARVPKGKAPIAEEAGRIRIDEEERFYTITIVPDNGADEI
VYEKLSKRQGLAHITLDDGSSRPIADGDHLERGQALLEGPADPHEVLAILGPNGVQKHLV
DEVQKVYRSQGVSIHDKHIEVIVRQMMRRVAINESNSTEFLPGALVERAELTAENRRVLT
EGGSPASARPVLMGITKASLATDSWLSAASFQETTRVLTDAAINKRSDRLVGLKENVIIG
KLIPAGTGINRYRNSTVEPTEEARAAAYSIPDYGDGFYGPEDGFGDATGASVRLDDLGY
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggacgtcaactacttcgacgagctggtcatcagcctcgcgaccgccgaggacatc
cgtaactggtcctacggcgaggtcaagaagccggagaccatcaactaccgcacactcaag
ccggagaaggagggcctgttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgtcgtgagcgtatgggccacatcgagctggccgcgccc
gtcacccacatctggtacttcaagggcgtcccgtcgcgtctgggttacctcctggacctc
gcgcccaaggacctcgacaagatcatctacttcgccgcctacgtcatcacgggcgtcgac
accgagctgcgtcacaacgagctcagcaccctcgaggcccaggtcctcgaggagcgcaag
atcatcgaggacgagcgcgactccgacatcgaggcccgcgcgcgcaagctcgaggccgac
ctcgccgagctcgaggccgagggcgccaaggccgaccagcgccgcaaggtcaaggacggc
ggcgagaaggagatgaagaagatccgcgaggccgcccagcgtgagctggaccgcctcgag
gagatctggaacaccttcgtcaagctcgacgtcaaccagatcatcgtcgacgagggcatc
taccgcgagctcgaggaccgcttcggtgagtacttctccggcggcatgggcgccgaggcg
atccaggcgctgctggagaacttcgacctcgaagccgaggccgagtccctgcgcgagatc
atccgcaacggcaagggtcagaagaagatccgcgccctcaagcggctcaaggtcgtctcc
gcgttcctgcagtcgggcaaccacccggccgcgatggtgctcggtgccgtcccggtgatc
ccgccggagctgcggccgatggtccagctcgacggtggccgcttcgccacctcggacctc
aacgacctctaccgtcgcgtgatcaaccgcaacaaccgcctcaagcgactgatggacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtcgacgcg
ctgttcgacaacggccgccgcggccggccggtcacggggccgggcaaccgcccgctcaag
tccctgtctgacctcctcaagggtaagcagggccggttccgtcagaacctgctcggcaag
cgtgtcgactactcgggccgttcggtcatcgtcgtcggtccgcagctccagctgcaccag
tgtggtctgcccaagctcatggcgctcgagctgttcaagccgttcgtcatgaagcggctc
gtggacctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgtcagcgc
gaccaggtgtgggacgtgctcgaagaggtcatcgccgagcacccggtgatgctcaaccgt
gcgcccacgctgcaccgtctcggcatccaggcgttcgagccgcagctcgtcgagggtaag
gccatccagctgcacccgctcgtgtgtgaggccttcaacgccgacttcgacggtgaccag
atggccgtgcacctcccgctgtccgcggaggcgcaggccgaggcgcgcatcctcatgctc
gcgtcgaacaacatcctgtcgccggcgtcgggtcgtccgctcgccatgccgcgactggac
atggtcacgggcctgtactacctgacccgtctggacgagggtgccgagggcgcctacgag
cccgccaccgacgacgcgccggcgaccggcgtgtacgcgaccccggccgaggccatcatg
gccgtcgacctgggtgtgctcgacatccacgccccgatccgggtccggatgacgcagcag
cgccccagcgccgagatcgaggcggagcagttccccgagggctggacccccgggcaggag
tggctggccgagaccacgctcggccgcgtcatgttcaacgagctgctcccggcggactac
ccgtttgttaacgagcagatgccgaagaagcgtcaggccgtcatcatcaacgacctggcc
gagcgctacccgatgatcgtcgtggcgcagacggtggacaagctcaaggacaccggcttc
tactgggccacccggtcgggtgtcacgatcgccatgtccgacgtgctcgtgccgccggcc
aagaaggagatcctcgcctcgtacgacaccaaggccgcgcgcctggagtcgcagtacgac
ctcggcaagatcaccgacgaggagcgcaagagcgacctggtcaagctctggcaggaggcc
gccgacgagatcggccaggccatggaggccaactacccggacgacaacccgatcccgacg
atcgtgaagtcgggcgcggcgggcaacatgacccagatccggtcgctggccggcatgaag
ggcctggtgacccgtccgaacggcgagttcatcccgcagcccatcaagtcctcgttccgc
gagggcctgacggtgctcgagtacttcatgaacacgcacggtgcgcgtaagggcctggcc
gacaccgccctgcgtaccgccgactcgggctacctcacccgtcgtctcgtcgacgtctcc
caggacgtcatcgtccgcgagaccgactgtggcaccagcaagggcgtggagacgacgatc
gcccgtccgatcatggacgcccagggcaattccacgggtgttctcgagcgcgacgagcac
gtcgagacctcgacgttcgcccggacgctcgcggaggacgcggtcgacgcgaacggcacg
gtcatcgtgtcggcgggcaccgacctgggtgacccgaccatcgaggcgctcatcaacgcc
ggcgtggagaaggtcaaggtccgctcggtgctgacctgcaccaccggcaccggcgtctgc
gcgacctgctacggccgctcgatggcgaccggccagctggtcgacatcggcgaggccgtc
ggcatcgtcgccgcacagtcgatcggtgagcccggtacccagctcacgatgcgtacgttc
caccagggtggcgtcggcgacgacatcaccggtggtctgccgcgtgtgcaggagctgttc
gaggcgcgcgtgcccaagggcaaggcgccgatcgccgaggaagcgggccggattcgcatc
gacgaggaggagcgcttctacacgatcacgatcgtgcccgacaacggtgcggacgagatc
gtctacgagaagctctccaagcgtcagggcctcgcccacatcaccctcgacgacggctcc
tcgcggccgatcgccgacggcgaccatctcgagcgcggtcaggccctcctcgagggcccg
gccgacccgcacgaggtgctggcgatcctcggcccgaacggtgtccagaagcacctcgtc
gacgaggtgcagaaggtctaccgctcgcagggcgtgtcgatccacgacaagcacatcgag
gtcatcgtccgccagatgatgcgccgcgtggcaatcaacgagtcgaacagcaccgagttc
ctgccgggtgccctggtggagcgtgccgagctcacggcggagaaccgccgcgtgctcacc
gagggcggttcgccggcctcggcgcgcccggtcctcatgggcatcaccaaggcctcgctc
gccaccgactcgtggctgtcggcggcctccttccaggagaccacccgcgtcctcaccgac
gccgcgatcaacaagcggtcggaccggctcgtgggcctcaaggagaacgtcatcatcggt
aagctcatcccggcgggtaccggtatcaaccgctaccggaactcgacggtcgagcccacc
gaggaggcccgcgccgccgcctactccatcccggactacggcgacggcttctacggcccc
gaggacggtttcggcgacgccaccggcgcgtccgtccgcctcgacgacctgggctactga
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