Denitrificimonas caeni: O6P33_00805
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Entry
O6P33_00805 CDS
T08709
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dce
Denitrificimonas caeni
Pathway
dce03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dce00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
O6P33_00805 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dce03021
]
O6P33_00805 (rpoC)
03400 DNA repair and recombination proteins [BR:
dce03400
]
O6P33_00805 (rpoC)
Enzymes [BR:
dce01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
O6P33_00805 (rpoC)
Transcription machinery [BR:
dce03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
O6P33_00805 (rpoC)
DNA repair and recombination proteins [BR:
dce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
O6P33_00805 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
gerPA
DUF3150
Motif
Other DBs
NCBI-ProteinID:
WBE25426
UniProt:
A0AAE9VV25
LinkDB
All DBs
Position
complement(151108..155304)
Genome browser
AA seq
1398 aa
AA seq
DB search
MKDLLNLLKNQSQVEEFDAIKISLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALSKVRRERMAHIDLASPCAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVINPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLMEIDLEFEINSLREEIPQTNSETKIKKLSKRLKLMEAFHGSGNKPEWMVLS
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLDLSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFGKLEQRGLATTIKAAKKMVERELPEVWDVLADVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLES
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAVNAKGEGRIFADLQEVDRVYRSG
EADLHAKVKVRITETINSADGTSTHNTSIVDTTVGRALLFQIVPVGLPYSLVNQPMKKKA
ISNLINQCYRVVGLKETVIFADQLMYSGFAFSTISGVSIGVNDFVIPDEKTQIIDTAIEE
VKEIEKQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMTNLSTESVVDRDGNTVSQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTDEGLVMTPHIEGGDVVDPLGDRVL
GRVIAQDVLKPGSDEVLIPIDTLVDERWVEFIENNSIDEVVVRSPITCETRHGICAKCYG
RDLARGHEVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGSVRL
INLKHVSRADGNIVAVSRSGELAIADEFGRERERYKLPYGAVISVNEGDVVAAGAIVAKW
DPHTHPIVTETTGVVQFVGMEAGITIKRQTDELTGLSNIEVIDPQERPAAGKDIRPAIKL
VDDNGEDLFLPGTDVVAQYFLPPHALVNLSDGARINIGDVVARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTISFGKETKGKRRLVITPTDGSEPYEELIHKWRHLNVFE
GEQVNRGEVISDGPSNPHDILRLLGVSALARYIVTEIQDVYRLQGVKINDKHIETILRQM
LRKVEITESGDSSLIKGDQAEYNNVLEENEALVSKDRFPAKFERVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDFLRGLKENVVVGRLIPAGTGLAYHAERKRKRAIESPQG
VSASDVEAALSEALNLKQ
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttactcaatttgttaaaaaaccagagtcaggttgaagagtttgatgcgatt
aaaatatcgctcgcctctccggaaatgattcgttcatggtcctttggtgaagttaaaaag
ccagagaccattaactaccgcacatttaaaccagagcgtgacggtttattctgtgccaag
atttttggtccggtcaaagactatgagtgcttatgcggtaagtacaagcgtctcaagcac
cgtggtgtgatttgtgaaaagtgcggcgttgaagttgcgctgtctaaagtacgtcgtgag
cgtatggcccacattgacttggcatcgccttgtgcacatatttggttcttgaaatcactg
ccaagccgtattggtttgctgctggatatgaccctgcgcgatattgagcgcgtgttgtat
tttgaaagctatgtggtgatcaacccaggtatgaccaccctggaaaaaggccagttgctc
aacgatgagcagtattttgaagccttagaagagtttggtgacgactttgatgcccgtatg
ggtgctgaagcagtccgcgaattgctgatggaaattgatttagagtttgagatcaattcc
ttgcgtgaagagattccgcaaaccaactcagaaactaaaattaaaaaactgtctaagcgt
ttaaagttgatggaagccttccacggctcaggcaacaagcctgagtggatggtattaagc
gtactgccagtattaccaccagatttacgtccgttggtaccgctggatggtggccgcttt
gctacctctgacctaaacgacttataccgccgtgtaatcaaccgtaacaaccgcttgcgt
cgcctgttggatttatctgcgcctgatattatcgtgcgcaacgaaaagcgcatgctgcaa
gagtcggttgatgcgctgttagataacggccgtcgtggccgtgcgattaccggtagcaat
aagcgcccattgaaatctttggccgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgcttggtaagcgtgttgactactctggtcgttcagtgatcgtggtaggtccaacc
ctgcgtctacaccagtgtggcctgccaaagaaaatggcgctggaattatttaagccgttc
attttcggtaagcttgagcagcgtggtttagcgaccaccatcaaagcggccaagaaaatg
gttgagcgcgagttgccagaagtttgggacgtgttagccgatgtgattcgcgaacacccg
gtattgttgaaccgtgcaccaaccttgcaccgtttaggtatccaggcgtttgagccagtc
ctgattgaaggtaaggcgatccaattgcacccgttagtttgtgcagcgtataacgctgac
tttgacggtgaccaaatggcggtacacgtacccctgacgattgaagcacagcttgagtcc
cgtgctttgatgatgtcaaccaacaacattttgtcgcctgccaacggtgagccaatcatt
gtaccgtcacaagacgttgttcttggtttgtactatatgacccgtgaggcggttaacgcc
aaaggtgaaggtcgcatttttgctgacttgcaagaagttgaccgtgtttaccgttctggt
gaagcagacttgcacgctaaagttaaggtgagaatcaccgaaacaattaacagtgcagac
ggtacttctacgcacaacacgagcattgtcgacactactgttggccgcgccttgttgttc
cagattgtgcctgttggtttgccttattcgctggttaaccagccgatgaagaaaaaagct
atttctaacttgatcaaccagtgctaccgcgtagttggcttgaaagagacggtgattttt
gctgaccagttgatgtatagcggttttgctttctcaacaatttccggtgtttccatcggt
gtgaatgactttgtaattccagatgaaaagacgcaaatcattgatacagcgattgaagaa
gttaaagagattgaaaagcagtacgcctcaggtctggtaactcagggtgagaaatacaac
aaagtgatcgacttgtggtcaaaagctaacgatgaagtatcgaaagcgatgatgactaac
ctgtctaccgagtccgtagtggaccgtgacggcaataccgtgagccaagagtcgttcaac
tccatgtacatgatggctgactcaggagcgcgaggctcggcagcgcagattcgtcagttg
gcgggtatgcgtggtctgatggctaagccggatggttcgattatcgaaacaccgattacc
gcaaacttccgtgaaggtctaaacgtactgcagtactttatttcgactcacggtgcgcgt
aaaggtctggcggataccgcgttgaaaactgctaactccggttatctaacccgtcgtcta
gttgacgttgcgcaagacttggttgtgactgaggttgactgtggtactgatgaaggtcta
gtaatgacgccacacattgagggtggtgacgttgtagatccgcttggtgatcgcgtgcta
ggtcgtgtgattgcacaagacgtattgaagccaggcagcgacgaagttctgatcccaatt
gatacattggtggatgagcgctgggttgagtttattgaaaacaacagtattgatgaggtc
gtggttcgctcaccaattacctgtgaaacccgtcatggtatttgcgctaagtgctatggt
cgtgacttggcccgtggccatgaggttaaccagggtgaagcagttggtgttattgctgct
caatccattggtgagcctggtacacagttgacgatgcgtacgttccacattggtggtgcg
gcgagtcgtacgtcagccgctgacagcgtacaagttaaaaacggcggttcagttcgctta
attaacttgaagcacgtgagccgtgccgatggcaatattgttgctgtgtcgcgctctggt
gagctagccattgctgatgagtttggtcgtgagcgcgagcgttataagctcccttatggt
gcggtaatctcggtgaatgaaggtgatgtcgttgctgccggtgcgattgtggctaagtgg
gatccgcacactcacccaattgttactgaaaccacaggtgtggtgcagttcgttggtatg
gaagctggtattactattaagcgccaaactgatgagctaacaggtttgagcaatattgaa
gttatcgacccgcaggagcgtcctgctgctggtaaagatattcgcccagccattaaattg
gttgacgataatggtgaagacctgttcttgccaggtaccgatgttgttgcccagtacttc
ttgccgccccatgctttagtcaacctaagtgatggtgcgcgcattaatattggtgatgtt
gttgcgcgtattccgcaagagacatcaaaaactcgagacattactggtggtctaccacgg
gttgctgacttgtttgaagcgcgccgtccgaaagaagcatcgattcttgctgaagtcagc
ggaacgatttccttcggtaaagagactaaaggtaagcgtcgcttggtgattacaccaact
gacggtagcgagccgtacgaagagctgattcacaaatggcgtcacctcaacgtgtttgag
ggggagcaagttaatcgtggtgaagttatttctgacggaccaagcaacccgcatgatatc
ttacgtctgttaggtgtaagtgctttggcgcgttacatcgttacagagattcaagatgtt
taccgtttgcaaggtgttaaaatcaacgataaacacattgaaactattctgcgtcaaatg
ttgcgtaaagttgaaattaccgagtctggcgattcgtcgctgattaaaggtgatcaggct
gaatacaacaatgtgttagaagaaaacgaagctttagtaagtaaagatcgtttcccagct
aagtttgagcgtgtcttgttaggtattaccaaggcatcgttgtccacagagtcatttatc
tctgcggcatcgttccaggaaaccacacgggttctaacggaagcagcggtaactggtaaa
cgtgacttcttacgtgggctgaaagaaaacgtagttgttggtcgattaattccagcaggt
acgggattggcataccacgctgaacgtaaacgtaagcgtgcaattgagtcgccgcaaggt
gttagcgccagtgatgttgaggcagcactgagtgaggcactcaatttaaaacagtaa
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