Denitrificimonas caeni: O6P33_02705
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Entry
O6P33_02705 CDS
T08709
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dce
Denitrificimonas caeni
Pathway
dce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O6P33_02705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dce03019
]
O6P33_02705
Enzymes [BR:
dce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O6P33_02705
Messenger RNA biogenesis [BR:
dce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O6P33_02705
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WBE25770
UniProt:
A0AAE9VP51
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All DBs
Position
complement(555593..557398)
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AA seq
601 aa
AA seq
DB search
MSFSSLGLSQALVNAVEAAGYTSPSPVQLLAIPPALEGRDLMVAAQTGTGKTGGFALPIL
EILFPNGKPDREQRHRPRQPRVLVLTPTRELAAQVHDSFRLYARDLPFVSACIFGGVGMN
PQINAVAKGLDVLVACPGRLLDLVNQGKIDLSGVEILVLDEADRMLDMGFIHDVKKVLAK
LPSKRQNLLFSATFSQDITNLAGRLLHNPQRIEVTPPNTTVERIEQRVYRIQASHKRALL
AHLITMGAWEQVLVFTRTKHGANRLAEYLSKNGLPAAAIHGNKSQNARTKALAEFKAGSV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGLAVSLVAPDEERL
LKGIERMTRQKIEDGDTFGFDPSSVVIEKPEPRAPRPPRGGGRSATPRTTDKAKNPDKPR
AKRPAARNPERTDSTATATDKPAPRTRNPRNTRNQRSAAAPIVGAPELPPNRDPEVFLDD
AIDNFGNSVDYVSPYQNKGRGRRPNSNTPAGAQPRGARPARANNPAAATDKRRAPKKPRN
NPRRNDSRAALGSNEPAVSREAPQPLIIRKGERLPSLEQLEQLESRTRNKERPALLTSRT
D
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtccttttcctcgctaggcctatctcaggctctggtcaacgccgttgaagctgccggc
tatacatctccatcgccagtgcaattactggctattccaccggcactcgaaggccgcgac
ctgatggttgccgcacaaaccggtaccggtaaaactggcggctttgctctgcctatttta
gaaatcttgttccctaacggtaagcccgaccgcgaacaacgtcaccgcccgcgtcagccc
cgtgtcttagtgttaacaccaacacgtgaactggcggcgcaagtgcacgacagttttcga
ctgtatgcccgcgacttaccttttgtcagcgcctgtatttttggcggcgtcggcatgaac
ccgcaaatcaacgcggtcgctaaaggcttagatgttttagtggcttgcccaggtcgttta
ttggatttggtcaaccaaggcaaaattgatttaagcggcgtagaaattttagtgctggat
gaagccgaccgtatgctcgatatgggctttattcatgacgtgaagaaagtgctggctaaa
ttacctagcaagcgccaaaacttgctgttctcggcaacattctcgcaagacatcaccaat
ttagcgggccgtttattgcacaacccccagcgcattgaagtgacgcctcccaacactacg
gtagagcgtattgaacaacgggtgtaccgtattcaggcatcgcacaaacgcgctttatta
gcccacttgatcaccatgggtgcatgggagcaagttttagtatttacccgcactaagcac
ggcgctaaccgcttggctgaatacctgtcaaaaaacggcctgccagctgcagccattcat
ggtaacaaaagccaaaatgcccgcaccaaagctttagccgagtttaaagccggtagtgtg
cgcatcttagttgccaccgatattgctgcacgcggtctagatatcgatcaattaccacac
gtggttaacttcgaactgcctaacgtagaagaagattatgtgcaccgcattggccgcact
gggcgtgctggtcgttcaggtcttgcagtgtcattagtggcgccagatgaagagcgtctg
cttaagggcattgagcgcatgacccggcaaaaaatcgaagacggtgacacctttggtttt
gacccaagcagcgtcgtcattgaaaaacctgagccgcgcgctcctcgcccaccccgcggc
ggtggccgcagtgccactccacgcactacggataaggctaaaaacccagacaagccaaga
gctaaacgccctgcggcgcgtaaccctgagcgcaccgatagcacagcgacggccactgac
aaaccagcgccccgcacacgtaacccgcgtaacactcgcaatcaacgtagcgctgctgca
cctattgttggcgcaccagaattgccgccaaatcgcgaccctgaagtttttttagatgac
gccattgataattttggtaatagcgttgattacgttagcccttatcaaaataaaggtcgc
ggccgtcgccctaacagcaacactccagcgggtgcacaaccgcgcggtgctcgtccagcc
cgtgccaataaccctgcagctgccactgataaacgccgagcaccgaaaaaaccgcgtaat
aatccacgccgcaatgattcgcgcgcagcattaggtagcaatgaaccagctgttagccgc
gaagcgccgcaacccttaatcatccgcaagggtgagcgcttaccgagtctagaacagctt
gagcaattagagtcacgcacacgcaataaagagcgcccagctttgttgacttcccgtaca
gactaa
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